Browse Element(s) Details


Os.4835.1.S1_at

Description gb:CR280851
DB_XREF= gi:44667417
DB_XREF=CR280851
CLONE=y733b03p3
TID=Os.4835.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.4835 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g315207/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31460Os.51625.1.S1_at10/114+18636414..18637062expressed protein
LOC_Os04g31470OsAffx.3966.1.S1_at11/114+18638500..18639072hypothetical protein
LOC_Os04g31484Os.51402.1.S1_at11/114+18639691..18641815expressed protein
LOC_Os04g31484Os.51402.1.S2_at11/114+18639691..18641815expressed protein
LOC_Os04g31500NANA4+18644984..18651143retrotransposon protein, putative, unclassified
LOC_Os04g31510NANA4+18652054..18654910retrotransposon protein, putative, unclassified
LOC_Os04g31520OsAffx.3967.1.S1_s_at11/114+18658911..18659588expressed protein
LOC_Os04g31520Os.4835.1.S1_at7/114+18658911..18659588expressed protein
LOC_Os04g31530OsAffx.14070.1.S1_at11/114+18672030..18673476hypothetical protein
LOC_Os04g31540OsAffx.14071.1.S1_at11/114+18674642..18675934F-box domain containing protein
LOC_Os04g31550Os.14285.2.S1_at11/114+18682233..18682955expressed protein
LOC_Os04g31550Os.54120.1.S1_at1/114+18682233..18682955expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4835.1.S1_at--509--1651Chr04:18659405..18659429 (25 bp)
AGCGACGATGTGTATATATCACTTT
LOC_Os04g31520
Os.4835.1.S1_at--1098--211Chr04:18659420..18659444 (25 bp)
ATATCACTTTTTCTACGGACGTCGA
LOC_Os04g31520
Os.4835.1.S1_at--479--3951Chr04:18659435..18659459 (25 bp)
CGGACGTCGAACCTCTGTAATTTGA
LOC_Os04g31520
Os.4835.1.S1_at--745--8731NONE
TGTAATTTGAGCATCTCGGCCGGGC
NONE
Os.4835.1.S1_at--281--9451NONE
TCGGCCGGGCGATCGATTTGCTATT
NONE
Os.4835.1.S1_at--230--6531Chr04:18659479..18659503 (25 bp)
GATTTGCTATTCGTCGACGATCCCT
LOC_Os04g31520
Os.4835.1.S1_at--576--5751NONE
GACGATCCCTTCTATTATCTCAAGT
NONE
Os.4835.1.S1_at--548--9551NONE
TCTATTATCTCAAGTTTGTGCTTAA
NONE
Os.4835.1.S1_at--397--10791Chr04:18659519..18659543 (25 bp)
TTGTGCTTAAACAGTTTGTGCCCGT
LOC_Os04g31520
Os.4835.1.S1_at--58--1211Chr04:18659531..18659555 (25 bp)
AGTTTGTGCCCGTCATCAGCAACGA
LOC_Os04g31520
Os.4835.1.S1_at--688--10811Chr04:18659534..18659558 (25 bp)
TTGTGCCCGTCATCAGCAACGACTT
LOC_Os04g31520
Target Sequence 
AGCGACGATGTGTATATATCACTTTTTCTACGGACGTCGAACCTCTGTAATTTGAGCATCTCGGCCGGGCGATCGATTTG
CTATTCGTCGACGATCCCTTCTATTATCTCAAGTTTGTGCTTAAACAGTTTGTGCCCGTCATCAGCAACGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4835.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis