Browse Element(s) Details


Os.48353.1.S1_at

Description gb:AK072229.1
DB_XREF= gi:32982252
TID=Os.48353.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169N10, full insert sequence.
FL= gb:AK108072.1 gb:AK072229.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5113010/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51110Os.7164.1.S1_at11/112+31260459..31264070MIP family channel proteins containing protein, expressed
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48353.1.S1_at--217--2591Chr02:31280061..31280085 (25 bp)
AACGTGTTCGATCTCCAGGCTTGGC
LOC_Os02g51130
Os.48353.1.S1_at--620--3511Chr02:31280277..31280301 (25 bp)
CATGACGTTCTACGGCAACACGAGG
LOC_Os02g51130
Os.48353.1.S1_at--194--5111Chr02:31280319..31280343 (25 bp)
GCACGTGATGGGACTCGGGTACAAC
LOC_Os02g51130
Os.48353.1.S1_at--788--1071Chr02:31280369..31280393 (25 bp)
AGGGAGCCGCGGTGATACACTTCAA
LOC_Os02g51130
Os.48353.1.S1_at--300--5671Chr02:31280481..31280505 (25 bp)
GACATTGTGCAACTTCGGACTCTGA
LOC_Os02g51130
Os.48353.1.S1_at--1099--8111Chr02:31280497..31280521 (25 bp)
GGACTCTGATCTTTGCTACGATTTC
LOC_Os02g51130
Os.48353.1.S1_at--548--751Chr02:31280537..31280561 (25 bp)
ATGTAGGTTCAGTCGTTTCTGCCTG
LOC_Os02g51130
Os.48353.1.S1_at--688--1391Chr02:31280588..31280612 (25 bp)
AGACGAGTTAATGGCTCTGCTCCGC
LOC_Os02g51130
Os.48353.1.S1_at--627--3831Chr02:31280604..31280628 (25 bp)
CTGCTCCGCTAACTGTATTGTGTTT
LOC_Os02g51130
Os.48353.1.S1_at--373--4211Chr02:31280632..31280656 (25 bp)
CCCCTTGTCATTTAGGCTGTCTGAA
LOC_Os02g51130
Os.48353.1.S1_at--796--711Chr02:31280692..31280716 (25 bp)
ATGATATCCCGTTCATTACCGTGGG
NONE
Target Sequence 
AACGTGTTCGATCTCCAGGCTTGGCGCCGGGACCAATGCACCCAGCGATTCCACCAGCTCATGGAAATGAACGAGAACGG
CACGCTGTGGGATCCAGCGTCCGTTCTGCCGGCGGGGCTCATGACGTTCTACGGCAACACGAGGCCGCTGGACAAGTCGT
GGCACGTGATGGGACTCGGGTACAACCCGCACATCAGGCCGGAGGACATCAAGGGAGCCGCGGTGATACACTTCAACGGG
AACATGAAGCCGTGGCTCGACGTCGCCTTCAACCAGTACAAGCATCTCTGGACCAAGTACGTCGACACCGAGATGGAGTT
CCTGACATTGTGCAACTTCGGACTCTGATCTTTGCTACGATTTCAATGGTAATGATCAGATGTAGGTTCAGTCGTTTCTG
CCTGCCGCTGTTGTTGCAACTTGCAAAAGCAGACGAGTTAATGGCTCTGCTCCGCTAACTGTATTGTGTTTGTCCCCCTT
GTCATTTAGGCTGTCTGAACTGAAGAAATCTCTCATGTATTATGGTACTAGTAGATGATATCCCGTTCATTACCGTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis