Browse Element(s) Details


Os.48456.1.S1_at

Description gb:AK072239.1
DB_XREF= gi:32982262
TID=Os.48456.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003G05, full insert sequence.
FL= gb:AK072239.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4864011/11pollen-specific kinase partner protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48600Os.49512.1.S1_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48600Os.49512.1.S1_s_at11/115+27777358..27781768Glycosyltransferase family 43 protein, expressed
LOC_Os05g48610OsAffx.15153.1.S1_x_at11/115+27784557..27785049expressed protein
LOC_Os05g48610Os.19990.1.S1_x_at2/115+27784557..27785049expressed protein
LOC_Os05g48620Os.15195.1.S1_at11/115+27785202..27794256expressed protein
LOC_Os05g48630Os.10136.1.S1_at11/115+27795383..27796345Photosystem I reaction center subunit VI, chloroplast precursor, putative, expressed
LOC_Os05g48640Os.48456.1.S1_at11/115+27796794..27799616pollen-specific kinase partner protein, putative, expressed
LOC_Os05g48650OsAffx.15154.1.S1_at8/115+27800234..27801140DNA-binding protein, putative, expressed
LOC_Os05g48660Os.17666.1.S1_at11/115+27803341..27806137Protein kinase domain containing protein, expressed
LOC_Os05g48670OsAffx.27371.1.S1_at11/115+27809352..27812420Tub family protein, expressed
LOC_Os05g48680Os.54463.1.S1_at11/115+27812777..27813377expressed protein
LOC_Os05g48690Os.35356.1.S1_at11/115+27815785..27819208expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005089molecular_functionRho guanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48456.1.S1_at--996--3611Chr05:27797350..27797374 (25 bp)
CTTTCACGGTTATGTCTCGAATCGA
LOC_Os05g48640
Os.48456.1.S1_at--277--4191Chr05:27797305..27797329 (25 bp)
CCCTCGCGCAAGCTTCTAATACTAG
LOC_Os05g48640
Os.48456.1.S1_at--246--10751Chr05:27797227..27797251 (25 bp)
TTGTCATTGATGCTAAGGCCGAGGT
LOC_Os05g48640
Os.48456.1.S1_at--1130--8171Chr05:27797184..27797208 (25 bp)
GGAACCAGTTTCAGCGACACTATTT
LOC_Os05g48640
Os.48456.1.S1_at--881--5691Chr05:27797159..27797183 (25 bp)
GACTTTGTCAGTCCTCGAGATCAAG
LOC_Os05g48640
Os.48456.1.S1_at--663--2311Chr05:27797064..27797088 (25 bp)
AAAGGTCTCACCGATTGCAACTAAG
LOC_Os05g48640
Os.48456.1.S1_at--603--5411Chr05:27796996..27797020 (25 bp)
GAAGCCCAATATCTAGACACTAGTT
LOC_Os05g48640
Os.48456.1.S1_at--402--10111Chr05:27796951..27796975 (25 bp)
TATGGATGATGCTCGCTGCAGCAGC
LOC_Os05g48640
Os.48456.1.S1_at--441--5051Chr05:27796870..27796894 (25 bp)
GCAGAATTGAGCATGTACCAGTGTG
LOC_Os05g48640
Os.48456.1.S1_at--527--5132Chr11:17071313..17071336 (24 bp)
GCAAATTTTAGCCATCTTCACCTCC
NONE
Os.48456.1.S1_at--853--91Chr05:27796813..27796837 (25 bp)
ATTCCCAATGGAAGCTTGGTGCACA
LOC_Os05g48640
Target Sequence 
CTTTCACGGTTATGTCTCGAATCGAAGATGTTCTTCATGCTGACTCCCTCGCGCAAGCTTCTAATACTAGAACCCAAGAA
TCAATGAGAATGGCCAGCTTATCAAGATATGACACTGATAAGGTTGTCATTGATGCTAAGGCCGAGGTAGAGAGACTGGG
AAGAATGGAACCAGTTTCAGCGACACTATTTGACTTTGTCAGTCCTCGAGATCAAGATGTTGTGGCGACGAAGATGGACT
CAAAAGAAAAGGGATGTAGGGGGGATGCTCATAGTCGAAAGTTGACAAAGGTCTCACCGATTGCAACTAAGNGGTATTCT
TACCTAGAAAAACTTGAGAATTTGAGTGGAACAAGAAGCCCAATATCTAGACACTAGTTTATGTGTAGGGGGAAAGACAT
ATGGATGATGCTCGCTGCAGCAGCTCATTCAGAAAAATACATGTATGTAAATAGCTTAGATGTTCATAGCATCATGAGAT
GCAGAATTGAGCATGTACCAGTGTGAGGTTTGGCAAATTTTAGCCATCTTCACCTCCATTCCCAATGGAAGCTTGGTGCA
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis