Browse Element(s) Details


Os.4853.1.S2_at

Description gb:AK103370.1
DB_XREF= gi:32988579
TID=Os.4853.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4853 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033126P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033126P18, full insert sequence.
FL= gb:AK063524.1 gb:AK060397.1 gb:AK103370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3571011/11UBX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35660NANA9+20509216..20513394retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g35670Os.18156.1.S1_at11/119+20518764..20522095expressed protein
LOC_Os09g35680Os.8347.1.S1_at11/119+20522219..20524930F-box family protein, putative, expressed
LOC_Os09g35690Os.14356.1.S1_at11/119+20528087..20531756Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g35700Os.12835.1.S1_at10/119+20533684..20534467YY1 protein precursor, putative, expressed
LOC_Os09g35710Os.4853.1.S1_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35710Os.4853.1.S2_at11/119+20534840..20539762UBX domain containing protein, expressed
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4853.1.S2_at--1003--5311Chr09:20535936..20535960 (25 bp)
GAAGGTGCTGTCACACTTGTAGTCC
LOC_Os09g35710
Os.4853.1.S2_at--325--1131Chr09:20535916..20535940 (25 bp)
AGTCCGCATGCCTGATGGTAGTCGA
LOC_Os09g35710
Os.4853.1.S2_at--456--7571Chr09:20535888..20535912 (25 bp)
GGGCGTCGCTTTCTGAAATCTCATA
LOC_Os09g35710
Os.4853.1.S2_at--620--3431Chr09:20535793..20535817 (25 bp)
CAGTTCCTTTTTGATTTCTTAGACA
LOC_Os09g35710
Os.4853.1.S2_at--539--8131Chr09:20535762..20535786 (25 bp)
GGACTTATAAGCCAGGAACCTACAG
LOC_Os09g35710
Os.4853.1.S2_at--1150--9271Chr09:20535231..20535255 (25 bp)
TAAGGTCGTACCCAAGGCGTGCTTT
LOC_Os09g35710
Os.4853.1.S2_at--271--2951Chr09:20535218..20535242 (25 bp)
AAGGCGTGCTTTCACCACTGGTGAG
LOC_Os09g35710
Os.4853.1.S2_at--1082--9651Chr09:20535207..20535231 (25 bp)
TCACCACTGGTGAGGGCGATATGTC
LOC_Os09g35710
Os.4853.1.S2_at--560--10111Chr09:20535188..20535212 (25 bp)
TATGTCATTTAGTGATCTGGGCCTA
LOC_Os09g35710
Os.4853.1.S2_at--748--7391Chr09:20535177..20535201 (25 bp)
GTGATCTGGGCCTAACAAGCAAGCA
LOC_Os09g35710
Os.4853.1.S2_at--485--10431Chr09:20535107..20535131 (25 bp)
TTAGTCATGGTTAGGGACACCCTCA
LOC_Os09g35710
Target Sequence 
GAAGGTGCTGTCACACTTGTAGTCCGCATGCCTGATGGTAGTCGACAGGGGCGTCGCTTTCTGAAATCTCATAAACTTCA
GTTCCTTTTTGATTTCTTAGACATTGGCAGGACTTATAAGCCAGGAACCTACAGACTGGTAATNCNNNNNNGTAAGGTCG
TACCCAAGGCGTGCTTTCACCACTGGTGAGGGCGATATGTCATTTAGTGATCTGGGCCTAACAAGCAAGCAGGAAGCCTT
ATTTCTAGAAAAGATTACAGAATAGTGAAGAAAGATTTAGTCATGGTTAGGGACACCCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4853.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis