Browse Element(s) Details


Os.48555.1.S1_at

Description gb:AK111246.1
DB_XREF= gi:32996455
TID=Os.48555.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-D07, full insert sequence.
FL= gb:AK111246.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4517011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45100NANA5+26115286..26116849UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45110Os.52713.1.S1_at2/115+26118087..26119505UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os05g45120NANA5+26122891..26123175Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45130Os.52789.1.S1_at11/115+26123671..26125446retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified
LOC_Os05g45170Os.48555.1.S1_at11/115+26140159..26141126expressed protein
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45210Os.47765.1.S1_at10/115+26154233..26162628respiratory burst oxidase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48555.1.S1_at--244--2591Chr05:26140678..26140702 (25 bp)
AACGAGTGCCTCCATGATTTCCTCT
LOC_Os05g45170
Os.48555.1.S1_at--258--9111Chr05:26140654..26140678 (25 bp)
TGCTCCATGCTTCCCGGAGGCGTAC
LOC_Os05g45170
Os.48555.1.S1_at--457--7191Chr05:26140621..26140645 (25 bp)
GTCGTGGATTCTCTCTCCGTCGAAG
LOC_Os05g45170
Os.48555.1.S1_at--975--8371Chr05:26140585..26140609 (25 bp)
GGCGAGAGGCTCAACGTCCCCGGCT
LOC_Os05g45170
Os.48555.1.S1_at--1105--5471Chr05:26140544..26140568 (25 bp)
GAACTTGGGCGCCTTTGCCATCTTC
LOC_Os05g45170
Os.48555.1.S1_at--201--10551Chr05:26140404..26140428 (25 bp)
TTCTCGAACACCCAGAGAGTCAAGT
LOC_Os05g45170
Os.48555.1.S1_at--133--4431Chr05:26140372..26140396 (25 bp)
GCCATGATGAACGTGAGCCGCAGGA
LOC_Os05g45170
Os.48555.1.S1_at--107--1671Chr05:26140357..26140381 (25 bp)
AGCCGCAGGATGTTACCGACTTGGA
LOC_Os05g45170
Os.48555.1.S1_at--514--114Chr05:26140211..26140235 (25 bp)
ATTCTGTCTTTACATGTCATCCTCC
LOC_Os05g45170
Os.48555.1.S1_at--109--9515Chr08:7768749..7768768 (20 bp)
TCTCCCTCCTTTATATACAGCTAGT
NONE
Os.48555.1.S1_at--888--9856Chr08:7768759..7768783 (25 bp)
TACAGCTAGTTAACCCAGTTTCCAC
NONE
Target Sequence 
AACGAGTGCCTCCATGATTTCCTCTGCTCCATGCTTCCCGGAGGCGTACACGCCNTCGTCGTGGATTCTCTCTCCGTCGA
AGCGCTCGACGTCGGCGAGAGGCTCAACGTCCCCGGCTTCGTCTTCCACCCGGCGAACTTGGGCGCCTTTGCCATCTTCC
TNCAGCTTCCTTCGATCCGTGCAGAGGGTGAGCCGAGCTTCAGGGAGCTAGGAGACAANCCTCTCGAGCTCCCTGGNCTC
CCTNCCATGNCGGNATCTCACCTCTTNTNCCAANTTCTCGAACACCCAGAGAGTCAAGTGTACAAGGCCATGATGAACGT
GAGCCGCAGGATGTTACCGACTTGGAAGAGAAGCAAGATATTTTCAGAGAATCAGAGAGAATTCGGAAGAAGAGGAGAAG
AAACAGAGAGAAAGACAGAGATGTAGAGAGAGAGAGAGAGAGAGATTGAGTTTGTATTGAGTTGGAAATTCTGTCTTTAC
ATGTCATCCTCCCGATTCTCTCTCCCTCCTTTATATACAGCTAGTTAACCCAGTTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis