Browse Element(s) Details


Os.48676.1.S1_at

Description gb:AK064234.1
DB_XREF= gi:32974252
TID=Os.48676.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H10, full insert sequence.
FL= gb:AK105976.1 gb:AK064234.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3763010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37570OsAffx.26364.1.S1_at11/114+22134740..22136134Eukaryotic aspartyl protease family protein
LOC_Os04g37580Os.5960.1.S1_at11/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37580Os.5217.1.S1_at7/114+22136263..22138900ChaC-like protein, expressed
LOC_Os04g37590OsAffx.14177.1.S1_at11/114+22139652..22142503F-box family protein, putative
LOC_Os04g37600Os.12776.1.S1_at11/114+22143167..22148131Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os04g37619Os.1605.1.S1_at10/114+22150569..22157739Zeaxanthin epoxidase, chloroplast precursor, putative, expressed
LOC_Os04g37630Os.53639.2.A1_at11/114+22157961..22168826expressed protein
LOC_Os04g37630Os.54686.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.48676.1.S1_at10/114+22157961..22168826expressed protein
LOC_Os04g37630Os.49908.2.A1_at1/114+22157961..22168826expressed protein
LOC_Os04g37640Os.57107.1.S1_at10/114+22162267..22164458Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37650Os.53639.1.S1_at11/114+22166287..22168634Xyloglucan fucosyltransferase family protein, expressed
LOC_Os04g37660Os.7326.1.S1_at11/114+22170230..22174758protein phosphatase 2C, putative, expressed
LOC_Os04g37670Os.14998.1.S1_at11/114+22177458..22182727expressed protein
LOC_Os04g37680NANA4+22192829..22193782esterase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48676.1.S1_at--1160--2711Chr04:22159685..22159709 (25 bp)
AAGCAAATCTGTGGCGATAACCTGT
LOC_Os04g37630
Os.48676.1.S1_at--284--6471Chr04:22159700..22159724 (25 bp)
GATAACCTGTATGCTCACACACTTG
LOC_Os04g37630
Os.48676.1.S1_at--139--491Chr04:22159735..22159759 (25 bp)
ATCTGGACTGTCTGCGACAACCTTA
LOC_Os04g37630
Os.48676.1.S1_at--702--5611Chr04:22159750..22159774 (25 bp)
GACAACCTTAAGCTGCCCAGCAGAT
LOC_Os04g37630
Os.48676.1.S1_at--474--4551Chr04:22159957..22159981 (25 bp)
GCGCCAAGCATCAGGTATTTCGTCA
LOC_Os04g37630
Os.48676.1.S1_at--697--10291Chr04:22159974..22159998 (25 bp)
TTTCGTCATTCTGATGGTGCTGGCT
LOC_Os04g37630
Os.48676.1.S1_at--968--7771Chr04:22159989..22160013 (25 bp)
GGTGCTGGCTTAGTTTTATCTTACA
LOC_Os04g37630
Os.48676.1.S1_at--1047--10451Chr04:22160054..22160078 (25 bp)
TTAGCTCGGCTTGTGGCATTATCAT
LOC_Os04g37630
Os.48676.1.S1_at--139--10831Chr04:22160088..22160112 (25 bp)
TTGTCCTCATTTACTCTTGACCATG
LOC_Os04g37630
Os.48676.1.S1_at--1150--6071Chr04:22160116..22160140 (25 bp)
GAGTATTGTACCCATCGCTGAGGAT
LOC_Os04g37630
Os.48676.1.S1_at--142--31Chr11:26264985..26265005 (21 bp)
ATTGACAACTAGCTGAGTGGCCCGC
NONE
Target Sequence 
AAGCAAATCTGTGGCGATAACCTGTATGCTCACACACTTGCCTCTGTCGCATCTGGACTGTCTGCGACAACCTTAAGCTG
CCCAGCAGATGTAATCAAAACTAGGATGATGAACCAGGGCAAGGATGCAAAAGTTCTATACAGGAATTCTTATGATTGTT
TGGTCAAGACTGTCAAACATGAGGGGTTGACAGCATTGTGGAAGGGATTCTTACCTACATGGGCCAGGCTTGGTCCATGG
CAGTTTGTGTTCTGGGTTTCCTATGAAAAATTGCGCCAAGCATCAGGTATTTCGTCATTCTGATGGTGCTGGCTTAGTTT
TATCTTACATGATTACAGGGAGCATCCAGAATAAGATTTTGTTAATTGTTTAGCTCGGCTTGTGGCATTATCATATACCA
TGCTTGTCCTCATTTACTCTTGACCATGTCTGAGTATTGTACCCATCGCTGAGGATGCAGTAGTTACAAATCACCACCAT
GTAACTTTATAATTATAATTGACAACTAGCTGAGTGGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis