Browse Element(s) Details


Os.4875.1.S1_at

Description gb:AK069808.1
DB_XREF= gi:32979832
TID=Os.4875.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023026C15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023026C15, full insert sequence.
FL= gb:AK069808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6910011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g69070Os.17449.1.A1_at11/111+40463075..40469609Auxin Efflux Carrier family protein, expressed
LOC_Os01g69080Os.11114.1.S1_at11/111+40473633..40477673Acyl-desaturase, chloroplast precursor, putative, expressed
LOC_Os01g69090Os.50999.1.S1_at10/111+40480075..40484031expressed protein
LOC_Os01g69100Os.4875.1.S1_at11/111+40494589..40497025expressed protein
LOC_Os01g69110Os.50224.1.S1_at11/111+40497771..40500139expressed protein
LOC_Os01g69120Os.27831.1.S1_at10/111+40502554..40509529expressed protein
LOC_Os01g69130Os.19079.1.S1_at11/111+40509609..40517730Dynamin-related protein 3A, putative, expressed
LOC_Os01g69140Os.55111.1.S1_at2/111+40519858..40521570regulatory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4875.1.S1_at--838--2531Chr01:40496470..40496494 (25 bp)
AACTAGCCGAGCTCTTGCAGGAGGC
LOC_Os01g69100
Os.4875.1.S1_at--683--291Chr01:40496515..40496539 (25 bp)
ATAGCACCGATGCATCTGTTCCAGA
LOC_Os01g69100
Os.4875.1.S1_at--83--5431Chr01:40496588..40496612 (25 bp)
GAAGCCAGTATCTGAGTCCAGCTCC
LOC_Os01g69100
Os.4875.1.S1_at--500--7431Chr01:40496615..40496639 (25 bp)
GTGTAGCACAGAACCGACGCCGATC
LOC_Os01g69100
Os.4875.1.S1_at--918--8291Chr01:40496696..40496720 (25 bp)
GGCTTTTGTTCATACCCTAGACTTA
LOC_Os01g69100
Os.4875.1.S1_at--1035--1451Chr01:40496734..40496758 (25 bp)
AGAAGATGACCCCTGGGCCTTGTGC
LOC_Os01g69100
Os.4875.1.S1_at--797--8431Chr01:40496749..40496773 (25 bp)
GGCCTTGTGCTGTTTGACATGGCTG
LOC_Os01g69100
Os.4875.1.S1_at--985--4911Chr01:40496773..40496797 (25 bp)
GCTTCCCTTCTATGAGCTGTATCTA
LOC_Os01g69100
Os.4875.1.S1_at--991--9511Chr01:40496794..40496818 (25 bp)
TCTACAATATACTACCTGATCCGGC
LOC_Os01g69100
Os.4875.1.S1_at--804--9271Chr01:40496813..40496837 (25 bp)
TCCGGCCCTGAGTTCACTGTAAAGA
LOC_Os01g69100
Os.4875.1.S1_at--803--6871Chr01:40496844..40496868 (25 bp)
GTATTGAGAGCACTATATCCTTGTA
LOC_Os01g69100
Target Sequence 
AACTAGCCGAGCTCTTGCAGGAGGCGATGCAGAATGGTTCCGAAGATAGCACCGATGCATCTGTTCCAGACATCAGCAAG
AATGAGAAGCAGCAATTCCAGCCTNTTTCTGNCAGCTGTGAAGCCAGTATCTGAGTCCAGCTCCACGTGTAGCACAGAAC
CGACGCCGATCAGAGAAGCGAAGAATCGCAAGGAGAAGGCGTGGTACACCNGGTCGCTGTTGCTTGCCGGCTTTTGTTCA
TACCCTAGACTTAGATGAGAGGAGGCAGAAGATGACCCCTGGGCCTTGTGCTGTTTGACATGGCTGCTTCCCTTCTATGA
GCTGTATCTACAATATACTACCTGATCCGGCCCTGAGTTCACTGTAAAGAAGACTAGTATTGAGAGCACTATATCCTTGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4875.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis