Browse Element(s) Details


Os.48817.1.A1_at

Description gb:AK066397.1
DB_XREF= gi:32976415
TID=Os.48817.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013061M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013061M19, full insert sequence.
FL= gb:AK066397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4573010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45700OsAffx.4101.1.S1_at11/114+26813732..26815736COBRA-like protein 6 precursor, putative, expressed
LOC_Os04g45710OsAffx.4102.1.S1_at9/114+26816354..26821348hypothetical protein
LOC_Os04g45720Os.18249.1.S1_at10/114+26824892..26829817aldehyde dehydrogenase family protein, expressed
LOC_Os04g45730Os.48817.1.A1_at10/114+26839293..26841021Protein kinase domain containing protein, expressed
LOC_Os04g45740OsAffx.26475.1.S1_at11/114+26847599..26848832hypothetical protein
LOC_Os04g45750Os.14289.1.S1_at11/114+26858283..26861210expressed protein
LOC_Os04g45750OsAffx.2477.1.S1_x_at1/114+26858283..26861210expressed protein
LOC_Os04g45760NANA4+26865957..26867459retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48817.1.A1_at--463--2891Chr04:26839806..26839830 (25 bp)
AAGGAGGCCGTCTGCCGCGACACCG
LOC_Os04g45730
Os.48817.1.A1_at--613--971Chr04:26839595..26839619 (25 bp)
AGGAGAAGACCTCCGCGTTGGCTTC
LOC_Os04g45730
Os.48817.1.A1_at--307--10851Chr04:26839578..26839602 (25 bp)
TTGGCTTCGGCCGTTGGATCGAGAT
LOC_Os04g45730
Os.48817.1.A1_at--79--4511Chr04:26839569..26839593 (25 bp)
GCCGTTGGATCGAGATTGGACCGCA
LOC_Os04g45730
Os.48817.1.A1_at--852--6051Chr04:26839558..26839582 (25 bp)
GAGATTGGACCGCAAGATGATGTTT
LOC_Os04g45730
Os.48817.1.A1_at--643--9631Chr04:26839403..26839427 (25 bp)
TCATGGCATCTTGTAGCACCAGTGA
LOC_Os04g45730
Os.48817.1.A1_at--1010--6951Chr04:26839391..26839415 (25 bp)
GTAGCACCAGTGAACGTATATTAGT
LOC_Os04g45730
Os.48817.1.A1_at--473--3151Chr04:26839353..26839377 (25 bp)
AATTCTTTCCTTGTAGATCGCGTGT
LOC_Os04g45730
Os.48817.1.A1_at--425--1271Chr04:26839339..26839363 (25 bp)
AGATCGCGTGTATTAGGTAGTAGTA
LOC_Os04g45730
Os.48817.1.A1_at--637--9891Chr04:26839316..26839340 (25 bp)
TACTTTAGATGGTTGGTGGTGGACA
LOC_Os04g45730
Os.48817.1.A1_at--941--3231NONE
CAAGCAATTTGGTTTCATTTTGGGT
NONE
Target Sequence 
AAGGAGGCCGTCTGCCGCGACACCGGGCGGCGTCTCACTGCCGCCGTAGGTCCCATGCNNNGNNNNGGGAAGGTGGCCGA
CGTTGTCGACCGGAGGCTCGGAGGCGAGCACGACGGCGCAGAGGCGNCTGTCATGGCGGAGCTCGCCATGCAGTGCATCG
GCGACAGCCCCGGGCTGAGGCCGTCCATGGCCGACGTGGTGCGCGCGCTCNCAGGAGAAGACCTCCGCGTTGGCTTCGGC
CGTTGGATCGAGATTGGACCGCAAGATGATGTTTNAANTNTTCTGGGTGTAGACTGTGAATAGTACCAGTATTTTAGGGT
AGGTAGGAGAAGAATGTGTGTACTGTGTAGTTTGAGAAGGTAGATTAGTTTAAGCNTTTGGATCAGATAGAAAATTTTGT
GATNTCATGGCATCTTGTAGCACCAGTGAACGTATATTAGTANTTCAGTAATTAAATTCTTTCCTTGTAGATCGCGTGTA
TTAGGTAGTAGTACTTTAGATGGTTGGTGGTGGACAAGCAATTTGGTTTCATTTTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48817.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis