Browse Element(s) Details


Os.49080.1.S1_at

Description gb:AK103333.1
DB_XREF= gi:32988542
TID=Os.49080.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49080 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125O08, full insert sequence.
FL= gb:AK103333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0945010/11DNAJ protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09400Os.18387.1.S1_at11/117+4948128..4961613expressed protein
LOC_Os07g09410OsAffx.10222.1.S1_x_at2/117+4963554..4965589hypothetical protein
LOC_Os07g09420Os.10872.1.S1_at11/117+4967673..4969425ATPase, AAA family protein, expressed
LOC_Os07g09430OsAffx.28361.1.S1_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09430OsAffx.28361.1.S1_x_at11/117+4974023..4974364hypothetical protein
LOC_Os07g09450Os.49080.1.S1_at10/117+4976267..4979956DNAJ protein, putative, expressed
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49080.1.S1_at--546--7531Chr07:4978761..4978785 (25 bp)
GTGGCTTTCAACCTACAATGACTCG
LOC_Os07g09450
Os.49080.1.S1_at--671--8151Chr07:4976680..4976704 (25 bp)
GGAAAACGCCCATCCTGAGAAGGTA
LOC_Os07g09450
Os.49080.1.S1_at--713--8571Chr07:4976633..4976657 (25 bp)
TGGTTGCTAACCATCCAGATGCAGG
LOC_Os07g09450
Os.49080.1.S1_at--989--7831Chr07:4976607..4976631 (25 bp)
GGTAGCCATTACCTTGCTTCAAAGA
LOC_Os07g09450
Os.49080.1.S1_at--719--7691Chr07:4976538..4976562 (25 bp)
GGGTCAGCCTTTTGATTATTACAAT
LOC_Os07g09450
Os.49080.1.S1_at--1117--351Chr07:4976512..4976536 (25 bp)
ATAATGCACCATATGTTCTTTCAAT
LOC_Os07g09450
Os.49080.1.S1_at--1001--10391Chr07:4976476..4976500 (25 bp)
TTTTGGTATCTGTAGTCTGAGGACT
LOC_Os07g09450
Os.49080.1.S1_at--803--2991Chr07:4976401..4976425 (25 bp)
AATGTTAGCAGGTCTGTCCACTGTT
LOC_Os07g09450
Os.49080.1.S1_at--767--8951Chr07:4976376..4976400 (25 bp)
TGACATTTCAGTGCCCGGTCGTGTT
LOC_Os07g09450
Os.49080.1.S1_at--216--9431Chr07:4976358..4976382 (25 bp)
TCGTGTTCGCTCAACTGGTTATCGA
LOC_Os07g09450
Os.49080.1.S1_at--107--4951NONE
GCATTTTGATAGCTCTTTCGTGGAC
NONE
Target Sequence 
GTGGCTTTCAACCTACAATGACTCGAAGAGAAGCTGGTTTAATCCTAGGTGTCAGGGAAAACGCCCATCCTGAGAAGGTA
AAAGAGGCGCATAAGAAGGTCATGGTTGCTAACCATCCAGATGCAGGCGGTAGCCATTACCTTGCTTCAAAGATCAATGA
GGCCAAAGATATTTTGTTAGGGAAGACAAAAGGAGGGGGGTCAGCCTTTTGATTATTACAATAATAATGCACCATATGTT
CTTTCAATGAAATGGTGAATTTTGGTATCTGTAGTCTGAGGACTTGAAAGGTAGGCTTAAATCTTGATGCGTGACTAGAA
ATTTATGGACAGAAAATGTTAGCAGGTCTGTCCACTGTTTGACATTTCAGTGCCCGGTCGTGTTCGCTCAACTGGTTATC
GAATAACTGATATACATGGAAATGGTAATACCTGTACGATGTATCATATNTCTATTAGACCTGTTGCATTTTGATAGCTC
TTTCGTGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis