Browse Element(s) Details


Os.49109.1.S1_at

Description gb:AK068384.1
DB_XREF= gi:32978402
TID=Os.49109.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146A10, full insert sequence.
FL= gb:AK070235.1 gb:AK068384.1 gb:AK059604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3885011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49109.1.S1_at--780--1711Chr08:24429725..24429749 (25 bp)
ACCACCACCATCTTGGATGTTCAGG
LOC_Os08g38850
Os.49109.1.S1_at--604--1071Chr08:24429881..24429905 (25 bp)
AGGGAGCTTATCAACCGAATGCAGA
LOC_Os08g38850
Os.49109.1.S1_at--402--7371Chr08:24429915..24430022 (25 bp)
GTGACTATTACCCTGAGACATTACA
LOC_Os08g38850
Os.49109.1.S1_at--61--2291Chr08:24430025..24430049 (25 bp)
AAATGTTTGTCGTGAACGCCGGCAG
LOC_Os08g38850
Os.49109.1.S1_at--434--6571Chr08:24430348..24430367 (20 bp)
GATTCCAGTGAGTTACCGGACTTCC
LOC_Os08g38850
Os.49109.1.S1_at--279--8071Chr08:24430360..24430384 (25 bp)
GGACTTCCTCGGTGGGTCATGCTCA
LOC_Os08g38850
Os.49109.1.S1_at--584--2191Chr08:24430562..24430586 (25 bp)
ACACAATTTGGAGGCTGGTTGCGTC
LOC_Os08g38850
Os.49109.1.S1_at--947--6451Chr08:24430592..24430616 (25 bp)
GATCAAGCCAGTGTCTGACGGTGAA
LOC_Os08g38850
Os.49109.1.S1_at--1135--2731Chr08:24430619..24430643 (25 bp)
AAGAAGCAGCTCATCCCTTCGGTTG
LOC_Os08g38850
Os.49109.1.S1_at--546--8271Chr08:24430774..24430798 (25 bp)
GGCAGGGCATGATTAGCGACATATC
LOC_Os08g38850
Os.49109.1.S1_at--664--6291Chr08:24430824..24430848 (25 bp)
GATGATTTTGGTTCTTTCTTTCAGA
LOC_Os08g38850
Target Sequence 
ACCACCACCATCTTGGATGTTCAGGGAGTGGGATTTAAGAATTTCTCAAAGACTGCGAGGGAGCTTATCAACCGAATGCA
GAAGATAGACAGTGACTATTACCCTGAGACATTACATCAAATGTTTGTCGTGAACGCCGGCAGCGGGTTCAAGTTGATCT
GGAATAGCGTGAAGGGCTTTCTGGACCCAAAAACTTCATCCAAGATTCATGTTCTTGGTTCGAATTACCAGAGTAGACTT
CTTGAAGTAATTGATTCCAGTGAGTTACCGGACTTCCTCGGTGGGTCATGCTCATGCAGTGACAAGGGTGGTTGTCTTGG
GTCGAATAAAGGCCCATGGAATGATCCTTTCATTTTGAAGCTGATACACAATTTGGAGGCTGGTTGCGTCAGAGAGATCA
AGCCAGTGTCTGACGGTGAAGAAAGAAGCAGCTCATCCCTTCGGTTGGAGCAGCCGAAGTGGCAGGGCATGATTAGCGAC
ATATCAAATGCTGAGTCAGGGTCAGACGTTGATGATTTTGGTTCTTTCTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis