Browse Element(s) Details


Os.49109.1.S2_at

Description gb:AK059604.1
DB_XREF= gi:32969622
TID=Os.49109.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49109 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023046G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-E10, full insert sequence.
FL= gb:AK070235.1 gb:AK068384.1 gb:AK059604.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3885011/11CRAL/TRIO, N-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38820Os.26724.1.S1_at10/118+24404843..24409326Endomembrane protein 70 containing protein, expressed
LOC_Os08g38830OsAffx.17411.1.S1_at11/118+24410006..24412288hypothetical protein
LOC_Os08g38840OsAffx.6077.1.S1_at11/118+24415173..24417501hypothetical protein
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49109.1.S2_at--970--9951Chr08:24432698..24432722 (25 bp)
TACCGCACCAAGTCAAGAACCATGT
LOC_Os08g38850
Os.49109.1.S2_at--457--5431Chr08:24432714..24432738 (25 bp)
GAACCATGTCGACATTTAACCGCGA
LOC_Os08g38850
Os.49109.1.S2_at--862--2691Chr08:24432745..24432769 (25 bp)
AAGCTCTGCCAGTGCCATTTTTGAC
LOC_Os08g38850
Os.49109.1.S2_at--1029--7751Chr08:24432830..24432854 (25 bp)
GGTGATATAGCCTGCTAAGCTGCTT
LOC_Os08g38850
Os.49109.1.S2_at--914--9791Chr08:24432845..24432869 (25 bp)
TAAGCTGCTTCCTTTCAGCATCTCA
LOC_Os08g38850
Os.49109.1.S2_at--240--7151Chr08:24432891..24432915 (25 bp)
GTCTGTACTAGTAAAGCCCTTCTCT
LOC_Os08g38850
Os.49109.1.S2_at--1138--2351Chr08:24432903..24432927 (25 bp)
AAAGCCCTTCTCTTGTGCCTGGTGA
LOC_Os08g38850
Os.49109.1.S2_at--316--9171Chr08:24432918..24432942 (25 bp)
TGCCTGGTGAATGTTGTGCCGTGCT
LOC_Os08g38850
Os.49109.1.S2_at--185--9191Chr08:24432934..24432958 (25 bp)
TGCCGTGCTTAGTGCAGCTATGTTT
LOC_Os08g38850
Os.49109.1.S2_at--857--10371Chr08:24432963..24432987 (25 bp)
TTTTTTGGCCAGCAAGTGATCTCGT
LOC_Os08g38850
Os.49109.1.S2_at--104--7411Chr08:24432978..24433002 (25 bp)
GTGATCTCGTCACGGTCTTTTGCAT
LOC_Os08g38850
Target Sequence 
TACCGCACCAAGTCAAGAACCATGTCGACATTTAACCGCGACGCATGAAGCTCTGCCAGTGCCATTTTTGACCTTCCCCA
ACTTCATCCCGGGCCAGGNAAAAAACCTGAAAGAGAAGAGAAGATAGCATTTGGTGATATAGCCTGCTAAGCTGCTTCCT
TTCAGCATCTCACCATCTTTTTTTTTTTGTAGTTGTCTGTACTAGTAAAGCCCTTCTCTTGTGCCTGGTGAATGTTGTGC
CGTGCTTAGTGCAGCTATGTTTTTTCTTTTTTGGCCAGCAAGTGATCTCGTCACGGTCTTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49109.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis