Browse Element(s) Details


Os.49111.1.S1_at

Description gb:AK068159.1
DB_XREF= gi:32978177
TID=Os.49111.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013135D03, full insert sequence.
FL= gb:AK068159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g489309/11ferric-chelate reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified
LOC_Os04g48930Os.49111.1.S1_at9/114+28959795..28962564ferric-chelate reductase, putative, expressed
LOC_Os04g48940Os.32496.1.S1_at9/114+28967957..28974485Mechanosensitive ion channel family protein, expressed
LOC_Os04g48950Os.52867.1.S1_at11/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48950OsAffx.31336.1.S1_x_at1/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48960OsAffx.14333.1.S1_at10/114+28978925..28980815hypothetical protein
LOC_Os04g48970OsAffx.22034.1.S1_at2/114+28981295..28984868transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0015688biological_processiron chelate transport
GO:0016020cellular_componentmembrane
GO:0000293molecular_functionferric-chelate reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49111.1.S1_at--972--6251NONE
GATGTCGTCGCAATCGCGCACAAGG
NONE
Os.49111.1.S1_at--669--9171NONE
TGCCCGCAGAGGAGGTCTTGTTCAA
NONE
Os.49111.1.S1_at--1062--4671Chr04:28960188..28960212 (25 bp)
GCGGTGCAGCGCCTGTACATATACC
LOC_Os04g48930
Os.49111.1.S1_at--59--2931Chr04:28960123..28960147 (25 bp)
AAGGACGTTGCTAAACCTGCTGCTC
LOC_Os04g48930
Os.49111.1.S1_at--4--4091Chr04:28960073..28960097 (25 bp)
CGAGCGCGGCCGTCCTGTGGAACAA
LOC_Os04g48930
Os.49111.1.S1_at--104--7191Chr04:28959941..28959965 (25 bp)
GTCGTCCCGATCTCAGAAGTACGAT
LOC_Os04g48930
Os.49111.1.S1_at--642--6991Chr04:28959923..28959947 (25 bp)
GTACGATGCACCGTTCAATCTTGTT
LOC_Os04g48930
Os.49111.1.S1_at--33--3631Chr04:28959904..28959928 (25 bp)
CTTGTTCTCCTTTTGGGTCGAATTG
LOC_Os04g48930
Os.49111.1.S1_at--256--7711Chr04:28959889..28959913 (25 bp)
GGTCGAATTGGTTCTGTTACCTTTG
LOC_Os04g48930
Os.49111.1.S1_at--877--4591Chr04:28959849..28959873 (25 bp)
GCGAAATTTGTCTGTGCAACGATGT
LOC_Os04g48930
Os.49111.1.S1_at--832--5151Chr04:28959834..28959858 (25 bp)
GCAACGATGTTGCTTGTCGAAACAA
LOC_Os04g48930
Target Sequence 
GATGTCGTCGCAATCGCGCACAAGGTGCCCGCAGAGGAGGTCTTGTTCAAGCCGTCGCCGTCGCACGCGCCCATCGCCCC
GGTGCTCGGCCACAACGGCTGGCTCTGGCTCGCCGCCGTCGTCTCCTCCTCATTCTTCATCTTCCTCTTGCTCGTCGGCG
CGGTGCAGCGCCTGTACATATACCCCGTCGACGGCAACAGCAACCGCGTGTACCCGTGGGCGGCAAGGACGTTGCTAAAC
CTGCTGCTCCTCTGCGTCGGCATCGCCGTGGCGGCGAGCGCGGCCGTCCTGTGGAACAAGCGGAGGAGGGCCGAGGAGGC
GAAGCAGGTCGAGAACGTGGCGACGCCAGCGTCGTCGCCGGCAACGTGGCTCGACAAGCCGCGTCGTGGGGACGCAGAGG
TAGGCCGTCGTCCCGATCTCAGAAGTACGATGCACCGTTCAATCTTGTTCTCCTTTTGGGTCGAATTGGTTCTGTTACCT
TTGAAGAGTGCGTGAAATGCGAAATTTGTCTGTGCAACGATGTTGCTTGTCGAAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49111.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis