Browse Element(s) Details


Os.49115.1.S1_at

Description gb:AK108630.1
DB_XREF= gi:32993839
TID=Os.49115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F01, full insert sequence.
FL= gb:AK108630.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3548011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35440OsAffx.32035.1.S1_at11/1112+21515914..21516225hypothetical protein
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35470OsAffx.21743.1.S1_s_at11/1112+21538011..21539415expressed protein
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49115.1.S1_at--692--2931Chr12:21542034..21542058 (25 bp)
AAGGCGTGGGTTCTTGCTCTCGACA
LOC_Os12g35480
Os.49115.1.S1_at--324--9511Chr12:21542051..21542075 (25 bp)
TCTCGACACGAGGAGCAGCACGCTG
LOC_Os12g35480
Os.49115.1.S1_at--534--6071Chr12:21542088..21542112 (25 bp)
GAGTTTGGCACTGAAACCGCACCAT
LOC_Os12g35480
Os.49115.1.S1_at--557--1731Chr12:21542108..21542132 (25 bp)
ACCATCTGCAGGTGTCACGTATCGC
LOC_Os12g35480
Os.49115.1.S1_at--727--10151Chr12:21542127..21542151 (25 bp)
TATCGCCCCAGTACTATATCCAAGT
LOC_Os12g35480
Os.49115.1.S1_at--1154--691Chr12:21542154..21542175 (22 bp)
ATGAGTCTGGTGACTTCTCCAGTGA
LOC_Os12g35480
Os.49115.1.S1_at--720--9711Chr12:21542811..21542835 (25 bp)
TCAAGATGGTACTGCTGGCCTGTTT
LOC_Os12g35480
Os.49115.1.S1_at--7--3611Chr12:21543050..21543074 (25 bp)
CTTGGCAATTTTGCATTCGGGTGCA
LOC_Os12g35480
Os.49115.1.S1_at--636--1411Chr12:21543075..21543099 (25 bp)
AGAAACGTGTTTGTTTCCCTGCGCT
LOC_Os12g35480
Os.49115.1.S1_at--762--10651Chr12:21543089..21543113 (25 bp)
TTCCCTGCGCTGGTGGTTAGGAGTA
LOC_Os12g35480
Os.49115.1.S1_at--597--1691Chr12:21543144..21543168 (25 bp)
AGCCAGTAGCTTGTCGATCTGTTAC
LOC_Os12g35480
Target Sequence 
AAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATC
TGCAGGTGTCACGTATCGCCCCAGTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGTGACTGGGAGAACTTAAA
GGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATG
ATGTTGTTACACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAA
TCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGA
GGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTA
GGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis