Browse Element(s) Details


Os.49119.1.S1_at

Description gb:AK106930.1
DB_XREF= gi:32992139
TID=Os.49119.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-C02, full insert sequence.
FL= gb:AK106930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5601011/11UDP-rhamnose:rhamnosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g55950Os.39653.1.S1_s_at11/112+34236941..34245178Mak10 subunit, NatC N-terminal acetyltransferase family protein, expressed
LOC_Os02g55959NANA2+34248460..34248929NA
LOC_Os02g55970Os.17247.1.S1_at11/112+34249895..34254683Clathrin assembly protein, putative, expressed
LOC_Os02g55980Os.55507.1.S1_at10/112+34254953..34257219expressed protein
LOC_Os02g55980Os.55507.1.S1_x_at10/112+34254953..34257219expressed protein
LOC_Os02g55990Os.8229.1.S1_at11/112+34258114..34259944Synaptobrevin family protein, expressed
LOC_Os02g56000Os.145.1.S1_a_at11/112+34260098..3426405826S protease regulatory subunit 6A homolog, putative, expressed
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56020Os.25112.1.S1_at11/112+34290504..34293551Methyltransferase WBSCR22, putative, expressed
LOC_Os02g56030Os.51243.1.S1_at11/112+34293595..34294763expressed protein
LOC_Os02g56040Os.52697.1.S1_at11/112+34294763..34301742DnaJ C terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49119.1.S1_at--151--4972Chr02:34270999..34271023 (25 bp)
GCATCAAGGATGTCGTTGGAGACCA
LOC_Os02g56010
Os.49119.1.S1_at--202--2091Chr02:34271041..34271065 (25 bp)
ACATCGACGAGCTTGTTGGTTACCT
LOC_Os02g56010
Os.49119.1.S1_at--651--6611Chr02:34271055..34271079 (25 bp)
GTTGGTTACCTCAGACGCTATAGTT
LOC_Os02g56010
Os.49119.1.S1_at--101--151Chr02:34271157..34271181 (25 bp)
ATTACTACTTCCTTGATTCCAAAAT
LOC_Os02g56010
Os.49119.1.S1_at--685--691Chr02:34271199..34271223 (25 bp)
ATGACCAATCCAAAGACCAGTCTGG
LOC_Os02g56010
Os.49119.1.S1_at--551--5851Chr02:34271213..34271237 (25 bp)
GACCAGTCTGGATAGATCTCTCTTT
LOC_Os02g56010
Os.49119.1.S1_at--817--6571Chr02:34271239..34271263 (25 bp)
GATTCGTTTTTCTTTATCCATCCTA
LOC_Os02g56010
Os.49119.1.S1_at--409--8011Chr02:34271279..34271303 (25 bp)
GGATGGCGGCTGTACCAAACTTTGA
LOC_Os02g56010
Os.49119.1.S1_at--722--7391Chr02:34271341..34271365 (25 bp)
GTGAGGTGTATGTTCATTGTCTTTT
LOC_Os02g56010
Os.49119.1.S1_at--523--6772Chr02:34271368..34271392 (25 bp)
GTTACTGCTCAATCACTGAACGTTC
LOC_Os02g56010
Os.49119.1.S1_at--706--3572Chr02:34271428..34271452 (25 bp)
CATTATTCTGGCTTAATTAGCTAGC
LOC_Os02g56010
Target Sequence 
GCATCAAGGATGTCGTTGGAGACCAGGAACGGGAGGAGCGCTACATCGACGAGCTTGTTGGTTACCTCAGACGCTATAGT
TGATCAGCGAACAAAAAAAATTGACGAGAACTTTTATATACGTGTACATAGTGATTAAAAACTAATTTTAAAAAATAAAT
TACTACTTCCTTGATTCCAAAATATTGCTATATACAGGATATGACCAATCCAAAGACCAGTCTGGATAGATCTCTCTTTA
GATTCGTTTTTCTTTATCCATCCTATATAGTAATATTTTAGGATGGCGGCTGTACCAAACTTTGAAATTAAATATTTTTT
TTCAGTAATAAAAAGATACGATGTGAGGTGTATGTTCATTGTCTTTTAAGTTACTGCTCAATCACTGAACGTTCGATTGT
AAACTTGTAAAGCTTTGAGAATAAGATGACATTATTCTGGCTTAATTAGCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis