Browse Element(s) Details


Os.25112.1.S1_at

Description gb:AK067584.1
DB_XREF= gi:32977602
TID=Os.25112.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013112C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013112C12, full insert sequence.
FL= gb:AK060165.1 gb:AK067584.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5602011/11Methyltransferase WBSCR22, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56010Os.49119.1.S1_at11/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56010OsAffx.19720.2.S1_s_at1/112+34268532..34271455UDP-rhamnose:rhamnosyltransferase, putative, expressed
LOC_Os02g56020Os.25112.1.S1_at11/112+34290504..34293551Methyltransferase WBSCR22, putative, expressed
LOC_Os02g56030Os.51243.1.S1_at11/112+34293595..34294763expressed protein
LOC_Os02g56040Os.52697.1.S1_at11/112+34294763..34301742DnaJ C terminal region family protein, expressed
LOC_Os02g56050Os.15820.1.A1_at10/112+34303557..34305979MoeZ/MoeB domain containing protein, expressed
LOC_Os02g56060NANA2+34306837..34312799retrotransposon protein, putative, unclassified
LOC_Os02g56070Os.28943.1.S1_x_at3/112+34313419..34315489retrotransposon protein, putative, unclassified
LOC_Os02g56080Os.47130.4.A1_x_at3/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed
LOC_Os02g56080Os.27455.2.S1_at1/112+34316047..34318217retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25112.1.S1_at--675--2331Chr02:34292489..34292513 (25 bp)
AAAGAAATCCTACCTTGTCCTCACT
LOC_Os02g56020
Os.25112.1.S1_at--588--3651Chr02:34292524..34292548 (25 bp)
CTTCTCTAAATTCATCGCTTCCGAA
LOC_Os02g56020
Os.25112.1.S1_at--1005--1071Chr02:34293165..34293189 (25 bp)
AGGGCAAGGCTTGGCTCTTGAACAA
LOC_Os02g56020
Os.25112.1.S1_at--530--4671Chr02:34293227..34293251 (25 bp)
GCGGACACCAAATACACAGGGCGGA
LOC_Os02g56020
Os.25112.1.S1_at--799--10871Chr02:34293285..34293309 (25 bp)
TTGGAATGCCTGTGCACCATTTTGC
LOC_Os02g56020
Os.25112.1.S1_at--1070--3351Chr02:34293299..34293323 (25 bp)
CACCATTTTGCCGTTTGTCATACTA
LOC_Os02g56020
Os.25112.1.S1_at--951--4491Chr02:34293308..34293332 (25 bp)
GCCGTTTGTCATACTAGTAGCTCAT
LOC_Os02g56020
Os.25112.1.S1_at--529--1251Chr02:34293364..34293388 (25 bp)
AGTTGGGTGAATGCGCTCTCTCTCT
LOC_Os02g56020
Os.25112.1.S1_at--178--9631Chr02:34293406..34293430 (25 bp)
TCATGTTCTGTAACCTTCTAGCAAT
LOC_Os02g56020
Os.25112.1.S1_at--22--4731Chr02:34293448..34293472 (25 bp)
GCTGTGCAAATCTATGTCCTACTTT
LOC_Os02g56020
Os.25112.1.S1_at--768--7251Chr02:34293463..34293487 (25 bp)
GTCCTACTTTTGAAGGATCCAGTAT
LOC_Os02g56020
Target Sequence 
AAAGAAATCCTACCTTGTCCTCACTTGTGGACCACCTTCTCTAAATTCATCGCTTCCGAAGGGTAAAGGTCAAGATGGTG
CCATGTGTAGTGATGATGATGAGAGCGATGATGGAAGTGGTGATGAAGATGNAGCCCAAACAGTCGGCATATATGAAAGA
AATAGGCCAAAGAAGAGGCAGAAGACGAAGAAGAACGGCAAGGGCAAGGCTTGGCTCTTGAACAAAAAGGAGCAGCTGAG
AAGGCGAGGACGGGANGGNGCCCGCGGACACCAAATACACAGGGCGGAAGCGGAAAAGCTACTTNTAGTTTCAAATGATT
CTTGGAATGCCTGTGCACCATTTTGCCGTTTGTCATACTAGTAGCTCATTATTAGTAGTACGAGAAAGGTTCAGTTGAAG
AGTTGGGTGAATGCGCTCTCTCTCTNTACACCANAGAGCCGNTCATGTTCTGTAACCTTCTAGCAATTNTGAGTTTTGAC
AAATGCTGTGCAAATCTATGTCCTACTTTTGAAGGATCCAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis