Browse Element(s) Details


Os.49143.1.S1_at

Description gb:AK072865.1
DB_XREF= gi:32982888
TID=Os.49143.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142I04, full insert sequence.
FL= gb:AK072865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g4000010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39950Os.50339.1.S1_at11/119+22908515..22909225Pollen-specific protein C13 precursor, putative, expressed
LOC_Os09g39960Os.52791.1.S1_at11/119+22911086..22916239Dynamin-related protein 1C, putative, expressed
LOC_Os09g39970Os.53580.1.S1_at11/119+22916723..22925111Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os09g39980Os.18292.1.S1_at4/119+22924985..22928249ubiquitin family protein, putative, expressed
LOC_Os09g40000Os.5443.1.S1_x_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.5443.1.S1_at11/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49143.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40000Os.49645.1.S1_at10/119+22933510..22938704expressed protein
LOC_Os09g40010Os.31312.2.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40010Os.31312.5.S1_x_at2/119+22948956..22952110retrotransposon protein, putative, unclassified
LOC_Os09g40014Os.33878.1.S1_at6/119+22958069..22961703hypothetical protein
LOC_Os09g40018Os.31312.5.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified
LOC_Os09g40018Os.31312.2.S1_x_at2/119+22962628..22965782retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49143.1.S1_at--18--2471Chr09:22935351..22935375 (25 bp)
AACAACATAATCCTGTCTGACCCAT
LOC_Os09g40000
Os.49143.1.S1_at--190--2171Chr09:22935395..22935419 (25 bp)
ACACCCACTGGCTGGCAGTAGGTAT
LOC_Os09g40000
Os.49143.1.S1_at--968--10191Chr09:22935426..22935450 (25 bp)
TATATACTTGACTTCCATACCACAC
LOC_Os09g40000
Os.49143.1.S1_at--463--10091Chr09:22935460..22935484 (25 bp)
TAGGCATACCACTTGTCTATACTTG
LOC_Os09g40000
Os.49143.1.S1_at--45--10611Chr09:22935512..22935536 (25 bp)
TTCTGCTTTGTGTTGTGCGTGAAGT
LOC_Os09g40000
Os.49143.1.S1_at--613--6431Chr09:22935600..22935624 (25 bp)
GATCATGTTTGTTATCCCTTTTGTT
LOC_Os09g40000
Os.49143.1.S1_at--670--10431Chr09:22935631..22935655 (25 bp)
TTAGTTACATCGTTGCAAGCCTTAT
LOC_Os09g40000
Os.49143.1.S1_at--1119--3111NONE
AATTTGTAAACTCTATCCTCTCTCT
NONE
Os.49143.1.S1_at--230--9551Chr09:22935722..22935746 (25 bp)
TCTATGACATGACGGCTCTGGGCAA
LOC_Os09g40000
Os.49143.1.S1_at--669--2731Chr09:22935745..22935769 (25 bp)
AAGCAAGGTCCTCCAGTTGAGCATG
LOC_Os09g40000
Os.49143.1.S1_at--374--8211Chr09:22935838..22935862 (25 bp)
GGAATTTCTTTCATACCATGGTTCT
LOC_Os09g40000
Target Sequence 
AACAACATAATCCTGTCTGACCCATCACATGGACATTGACTTCCACACCCACTGGCTGGCAGTAGGTATCACTTGTATAT
ACTTGACTTCCATACCACACTGGTAGCAATAGGCATACCACTTGTCTATACTTGGAAGGGAGAGGGATGAGACTATTTGA
TTTCTGCTTTGTGTTGTGCGTGAAGTGGCTAGGTGAGGAGAGCCAAGATTCATCTGTTTCTTGCATTTGGTTTTCTTATT
CATCACATAGATCATGTTTGTTATCCCTTTTGTTTAACAATTAGTTACATCGTTGCAAGCCTTATAAGACCAAGCAATCC
ACGGAATAAAGCGAGCTGAGATTAATTTGTAAACTCTATCCTCTCTCTCTCTCTATGACATGACGGCTCTGGGCAAGCAA
GGTCCTCCAGTTGAGCATGGGTATGCGTTACGCAGCTTGGGGCCACCTCCAAGCCATAACATCTGTTCAGTGTATTGTTT
CTTGTTTGGAATTTCTTTCATACCATGGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis