Browse Element(s) Details


Os.49156.1.S1_at

Description gb:AK067718.1
DB_XREF= gi:32977736
TID=Os.49156.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49156 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119K21, full insert sequence.
FL= gb:AK067718.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5717010/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57130OsAffx.26384.5.S1_x_at11/113+32508990..32514958Cell differentiation protein rcd1, putative, expressed
LOC_Os03g57140Os.6875.1.S1_at11/113+32520911..32523519expressed protein
LOC_Os03g57160Os.24550.1.S1_at11/113+32530682..32537963expressed protein
LOC_Os03g57170Os.49156.1.S1_at10/113+32538196..32541150LEM3 family/CDC50 family protein, expressed
LOC_Os03g57180OsAffx.25741.1.S1_at11/113+32542335..32542706hypothetical protein
LOC_Os03g57190Os.19844.1.S1_at11/113+32553330..32557193TCP family transcription factor containing protein, expressed
LOC_Os03g57200Os.12200.1.S1_s_at11/113+32558178..32559224glutathione S-transferase GSTU1, putative, expressed
LOC_Os03g57210Os.9472.1.S1_at11/113+32563547..32566812expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49156.1.S1_at--120--1571Chr03:32540566..32540590 (25 bp)
AGCTAAGCTGCCTACATAACTGTAC
LOC_Os03g57170
Os.49156.1.S1_at--262--5511Chr03:32540708..32540732 (25 bp)
GAACAACCAATTTTGTCATTGCCTT
LOC_Os03g57170
Os.49156.1.S1_at--605--351Chr03:32540778..32540802 (25 bp)
ATAATTGGCAGTTTTTAGTTCATCC
LOC_Os03g57170
Os.49156.1.S1_at--954--3651Chr03:32540854..32540878 (25 bp)
CTTCATGCATTTTAATTGGCTCTCT
LOC_Os03g57170
Os.49156.1.S1_at--266--31Chr03:32540868..32540892 (25 bp)
ATTGGCTCTCTACATGCTCATGAAG
LOC_Os03g57170
Os.49156.1.S1_at--644--8691Chr03:32540916..32540940 (25 bp)
TGTGCGTGTGCCATACTATTTGAGT
LOC_Os03g57170
Os.49156.1.S1_at--153--7111Chr03:32540966..32540990 (25 bp)
GTCATAAGGTTTCTGCCACTACTGC
LOC_Os03g57170
Os.49156.1.S1_at--223--2031Chr03:32540983..32541007 (25 bp)
ACTACTGCCCATATCTTATTTCCAT
LOC_Os03g57170
Os.49156.1.S1_at--615--251Chr03:32540993..32541017 (25 bp)
ATATCTTATTTCCATCGTCCAGTCT
LOC_Os03g57170
Os.49156.1.S1_at--340--511Chr03:32541006..32541030 (25 bp)
ATCGTCCAGTCTAACCATTGTGAAG
LOC_Os03g57170
Os.49156.1.S1_at--842--2131NONE
ACAGTTGTGCAGTCCGAGATTTCTC
NONE
Target Sequence 
AGCTAAGCTGCCTACATAACTGTACGATATGTAAGGTAAACATTTGACAAATACAGTGTAGTTGTTTCCCNTGTAAANCC
AAGACTATTCTTCTTTCATATGATAACATAGAGTTCAGACTGAATTTCGTGNCAGTGCAAATAGAACAACCAATTTTGTC
ATTGCCTTTTCTTTTAAGAATGCACACAATTTGTGCATTTGAAAAGAACTGGTATAATTGGCAGTTTTTAGTTCATCCAA
ACATTTGGTATGTTGGGATAATAAAGTGCTGATGAGGATTGACTGGCTTCTTCATGCATTTTAATTGGCTCTCTACATGC
TCATGAAGAAAACAAACTAACAAGAATTGTATGTGCGTGTGCCATACTATTTGAGTGACCATGTATAGTATAAATGCGTT
TGTCATAAGGTTTCTGCCACTACTGCCCATATCTTATTTCCATCGTCCAGTCTAACCATTGTGAAGATAAAAGCTGACTT
GGATTTCAAGAGATGGACAAGTTCAATTTAACAGTTGTGCAGTCCGAGATTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis