Browse Element(s) Details


Os.49185.1.S1_at

Description gb:AK073835.1
DB_XREF= gi:32983858
TID=Os.49185.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067E13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067E13, full insert sequence.
FL= gb:AK073835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4521011/11Peroxisomal biogenesis factor 11 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45160OsAffx.14274.1.A1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.1.S1_at11/114+26476543..26481414expressed protein
LOC_Os04g45160Os.50910.2.S1_x_at9/114+26476543..26481414expressed protein
LOC_Os04g45170OsAffx.26672.1.S1_x_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45170Os.56192.1.S1_at11/114+26487650..26489451serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os04g45180Os.52243.1.S1_at11/114+26490184..26493410EF hand family protein, expressed
LOC_Os04g45190Os.11087.1.A1_at11/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_x_at6/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190OsAffx.26470.1.S1_at4/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45190Os.24612.1.A1_at1/114+26493468..26496659MSP domain containing protein, expressed
LOC_Os04g45200Os.54567.1.S1_at11/114+26497361..26500426expressed protein
LOC_Os04g45200Os.54567.1.S1_x_at10/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_at5/114+26497361..26500426expressed protein
LOC_Os04g45200OsAffx.26470.1.S1_x_at3/114+26497361..26500426expressed protein
LOC_Os04g45200Os.56488.1.S1_at1/114+26497361..26500426expressed protein
LOC_Os04g45210Os.49185.1.S1_at11/114+26500992..26501945Peroxisomal biogenesis factor 11 family protein, expressed
LOC_Os04g45220OsAffx.26471.1.S1_at11/114+26502932..26503540hypothetical protein
LOC_Os04g45230OsAffx.4096.1.S1_at11/114+26506311..26506652hypothetical protein
LOC_Os04g45240Os.23271.2.A1_x_at1/114+26508238..26517894expressed protein
LOC_Os04g45254NANA4+26523040..26523317NA

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Gene Ontology Classification
GO idTypeName
GO:0016559biological_processperoxisome fission
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49185.1.S1_at--163--4031Chr04:26501648..26501672 (25 bp)
CGTCATCGGCATCGCGGACATCGAG
LOC_Os04g45210
Os.49185.1.S1_at--708--9471Chr04:26501683..26501707 (25 bp)
TCTGCAACCACGCTGTCACGTTGGG
LOC_Os04g45210
Os.49185.1.S1_at--481--2571Chr04:26501748..26501772 (25 bp)
AACTGGCCGTCGTGAGCTGTTCCAA
LOC_Os04g45210
Os.49185.1.S1_at--745--1591Chr04:26501762..26501786 (25 bp)
AGCTGTTCCAACTCTATTTTTCGCA
LOC_Os04g45210
Os.49185.1.S1_at--711--4131Chr04:26501787..26501811 (25 bp)
CGCTCTTCGGCCTTGTTACATCATA
LOC_Os04g45210
Os.49185.1.S1_at--160--431Chr04:26501806..26501830 (25 bp)
ATCATAATGATTTTGCCAGGCACTG
LOC_Os04g45210
Os.49185.1.S1_at--389--8251Chr04:26501824..26501848 (25 bp)
GGCACTGAACTCTGCTTCTGTAGCA
LOC_Os04g45210
Os.49185.1.S1_at--1044--10331Chr04:26501852..26501876 (25 bp)
TTTACAGTCGAGATACCGTTGGTGT
LOC_Os04g45210
Os.49185.1.S1_at--817--4231Chr04:26501867..26501891 (25 bp)
CCGTTGGTGTATAGTCGCATAGATC
LOC_Os04g45210
Os.49185.1.S1_at--490--291Chr04:26501885..26501909 (25 bp)
ATAGATCGACGCATACTGTACTGAA
LOC_Os04g45210
Os.49185.1.S1_at--1125--6991Chr04:26501902..26501926 (25 bp)
GTACTGAACAGCTCACTGGCAATCC
LOC_Os04g45210
Target Sequence 
CGTCATCGGCATCGCGGACATCGAGCCCAACCCGTTCTGCAACCACGCTGTCACGTTGGGGATCAGTGGGCTCGTCTCGG
CGTGGGCCGGCTGGTACAGGAACTGGCCGTCGTGAGCTGTTCCAACTCTATTTTTCGCACGCTCTTCGGCCTTGTTACAT
CATAATGATTTTGCCAGGCACTGAACTCTGCTTCTGTAGCAAATTTTACAGTCGAGATACCGTTGGTGTATAGTCGCATA
GATCGACGCATACTGTACTGAACAGCTCACTGGCAATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis