Browse Element(s) Details


Os.49187.1.S1_at

Description gb:AK069931.1
DB_XREF= gi:32979955
TID=Os.49187.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49187 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035J06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035J06, full insert sequence.
FL= gb:AK069931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0385011/11Glycosyl transferase family, a/b domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03820Os.54258.1.S1_at11/112+1603372..1607211expressed protein
LOC_Os02g03830Os.20156.1.S1_at5/112+1611135..1611557expressed protein
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0004048molecular_functionanthranilate phosphoribosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49187.1.S1_at--339--831Chr02:1632538..1632562 (25 bp)
ATGGTTGACCACCTCTTAGGCTGCA
LOC_Os02g03850
Os.49187.1.S1_at--171--5131Chr02:1632416..1632440 (25 bp)
GCACAAAGTGTCCTAGCTCGCAAGT
LOC_Os02g03850
Os.49187.1.S1_at--51--4811Chr02:1632401..1632425 (25 bp)
GCTCGCAAGTGTGCTGGCTGTACAA
LOC_Os02g03850
Os.49187.1.S1_at--1097--3172Chr09:5679518..5679783 (25 bp)
CAATTTTGGTTTCTGGTGTCGTGGT
NONE
Os.49187.1.S1_at--535--7491Chr02:1632359..1632383 (25 bp)
GTGGTGGAATACTCTCATCGACTCA
LOC_Os02g03850
Os.49187.1.S1_at--178--6111Chr02:1632323..1632347 (25 bp)
GAGTGCTTTCAAGTTGCTCAGCTAA
LOC_Os02g03850
Os.49187.1.S1_at--320--3111Chr02:1632276..1632300 (25 bp)
AATAGTCACTTGCAAGGCCTTGTCA
LOC_Os02g03850
Os.49187.1.S1_at--24--3071Chr02:1632190..1632214 (25 bp)
AATCTTTCTTTAGCCATGTTCTGAG
LOC_Os02g03850
Os.49187.1.S1_at--830--5951Chr02:1632166..1632190 (25 bp)
GAGAATCTGGCTGCGTGTACCATAT
LOC_Os02g03850
Os.49187.1.S1_at--527--791Chr02:1632123..1632147 (25 bp)
ATGTGTGACCGAATACCTGCATCAA
LOC_Os02g03850
Os.49187.1.S1_at--247--791Chr02:1632014..1632038 (25 bp)
ATGGGTGCTCGTTTGGAATTACTTG
LOC_Os02g03850
Target Sequence 
ATGGTTGACCACCTCTTAGGCTGCACTGGAGCTGAGGATATCAAGTCCGCACTTGACAGGGCAAGAGAAGCCATTGACAG
CGGTAAAGCCCTGAGCAGGCTCATGAATTACATAAAAATCTCGCACAAAGTGTCCTAGCTCGCAAGTGTGCTGGCTGTAC
AATTTTGGTTTCTGGTGTCGTGGTGGAATACTCTCATCGACTCATACACGAGCACGAGTGCTTTCAAGTTGCTCAGCTAA
CATGGAGAACATCCCTGNCGTGAATAGTCACTTGCAAGGCCTTGTCAANTAAANTTAACTGAAAGTCTGAAAAACTGAAA
ATGTTAGCGATGGGGAATACTTGATTAATCAATCTTTCTTTAGCCATGTTCTGAGAGAATCTGGCTGCGTGTACCATATG
CAAATTCTGTTCATGAGATGTGTGACCGAATACCTGCATCAAGACACAAGGGATGAGTTATCTTGATTTTGTTCGTGAAA
CAAAATCTGCAATTCTCGTTGTAATGGGTTACTCCGAAGTCTGAATATGGGTGCTCGTTTGGAATTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis