Browse Element(s) Details


Os.49210.1.S1_at

Description gb:AK066463.1
DB_XREF= gi:32976481
TID=Os.49210.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013065F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013065F17, full insert sequence.
FL= gb:AK066463.1 gb:AK060568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2367011/11jmjC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23630OsAffx.26986.1.S1_at6/115+13476234..13477166hypothetical protein
LOC_Os05g23640NANA5+13481560..13482045hypothetical protein
LOC_Os05g23650OsAffx.14791.1.S1_at11/115+13487760..13488479hypothetical protein
LOC_Os05g23660Os.53933.1.S1_at1/115+13490956..13494890transposon protein, putative, Pong sub-class
LOC_Os05g23670Os.49210.1.S1_at11/115+13495777..13501573jmjC domain containing protein, expressed
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49210.1.S1_at--599--5051Chr05:13496353..13496377 (25 bp)
GCAGCAATGGTTAATGACTCCACTA
LOC_Os05g23670
Os.49210.1.S1_at--1144--2831Chr05:13496273..13496297 (25 bp)
AAGTAGCTTCAATAATTCCTGTGTG
LOC_Os05g23670
Os.49210.1.S1_at--118--4851Chr05:13496216..13496240 (25 bp)
GCTAGCTAAGCTCCCAGAAGAACCA
LOC_Os05g23670
Os.49210.1.S1_at--329--131Chr05:13496167..13496191 (25 bp)
ATTCAGTAGCAGTCTAGTGGATCAG
LOC_Os05g23670
Os.49210.1.S1_at--292--1271Chr05:13496046..13496070 (25 bp)
AGATAACTCATCCTAGACAGCTTCC
LOC_Os05g23670
Os.49210.1.S1_at--305--5211Chr05:13496007..13496031 (25 bp)
GAATTGAAATAGAGCCACCATTGGT
LOC_Os05g23670
Os.49210.1.S1_at--697--3371Chr05:13495992..13496016 (25 bp)
CACCATTGGTTTGCATTCTTCTAGA
LOC_Os05g23670
Os.49210.1.S1_at--875--6511Chr05:13495955..13495979 (25 bp)
GATATTCATTTCAGCTTGATCCCAA
LOC_Os05g23670
Os.49210.1.S1_at--533--4931Chr05:13495942..13495966 (25 bp)
GCTTGATCCCAATTCATTTCTAACT
LOC_Os05g23670
Os.49210.1.S1_at--141--2231Chr05:13495851..13495875 (25 bp)
ACAAGTTGATGTTTCCTGTCGACAT
LOC_Os05g23670
Os.49210.1.S1_at--769--2631Chr05:13495810..13495834 (25 bp)
AACCTTGGCAGCTACCAATTGGAAA
LOC_Os05g23670
Target Sequence 
GCAGCAATGGTTAATGACTCCACTAACCCCCCAATAAAGTTGCTCGGGATTGAGATTAACCGGAGGGAATCAGAACAATC
AAGTAGCTTCAATAATTCCTGTGTGAGGAGGTCACACTTGGCANGTTGCTGAAGAAGGCTAGCTAAGCTCCCAGAAGAAC
CAGAGCTAATGGCGATGAAAAGAAGTATTCAGTAGCAGTCTAGTGGATCAGATAGCAGTGGTATCATCTGGAGTGGCAAT
TGCNACTCTNCAGGATGAGATGAACAATAATGTAGATACATAGTGCCATGAATAGATCAGAAATTTCAGATAACTCATCC
TAGACAGCTTCCCTAGGGAACCATTAGAATTGAAATAGAGCCACCATTGGTTTGCATTCTTCTAGAATTGCATTTCTTGA
TATTCATTTCAGCTTGATCCCAATTCATTTCTAACTTGATGGCAACAAGTTATTGTATTCTCTAATTGTTTCTGGATTAG
CCAGTTTATTGTGACCAATGTAACAAGTTGATGTTTCCTGTCGACATAAAGCTNACATGTACAAACCTTGGCAGCTACCA
ATTGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis