Browse Element(s) Details


OsAffx.4407.1.S1_at

Description tigr:9633.m02105
TID=OsAffx.4407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2369010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23670Os.49210.1.S1_at11/115+13495777..13501573jmjC domain containing protein, expressed
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein
LOC_Os05g23700Os.16460.1.S1_at11/115+13528318..13529695DNA-binding storekeeper protein, putative, expressed
LOC_Os05g23720Os.11624.1.S1_at11/115+13532510..13536360ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g23710OsAffx.14792.1.S1_at11/115+13535956..13537345hypothetical protein
LOC_Os05g23724NANA5+13541827..13542203NA
LOC_Os05g23740Os.9688.1.S1_at11/115+13543698..13549023Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4407.1.S1_at--950--3131NONE
AATTCGGGCAGGGATTGACTCGGAC
NONE
OsAffx.4407.1.S1_at--1130--51Chr05:13522161..13522185 (25 bp)
ATTGACTCGGACCTCGATGGGCTCA
LOC_Os05g23690
OsAffx.4407.1.S1_at--39--6271Chr05:13522146..13522170 (25 bp)
GATGGGCTCATGGATACCGTGTTCC
LOC_Os05g23690
OsAffx.4407.1.S1_at--180--452Chr05:13522704..13522728 (25 bp)
ATCTAGGGCCATAATGTCCACTCAG
NONE
OsAffx.4407.1.S1_at--805--2011Chr05:13522062..13522086 (25 bp)
ACTCAGAATGGTTTCGTGGATCGAA
LOC_Os05g23690
OsAffx.4407.1.S1_at--1122--10791Chr05:13521961..13521985 (25 bp)
TTGTAACTATTACCCGCTCGAATTC
LOC_Os05g23690
OsAffx.4407.1.S1_at--801--1911Chr05:13521917..13521941 (25 bp)
ACGGTCTACCTCCACATGTGTTAAA
LOC_Os05g23690
OsAffx.4407.1.S1_at--82--2231Chr05:13521825..13521849 (25 bp)
ACAAGGCTAGTGGTTCGTGGGTTCA
LOC_Os05g23690
OsAffx.4407.1.S1_at--1110--831Chr05:13521622..13521793 (25 bp)
ATGGAAACATGCTGGTGTCTACCTC
LOC_Os05g23690
OsAffx.4407.1.S1_at--264--3511Chr05:13521579..13521603 (25 bp)
CATGGTCAGCTCTACATCGCGTTGT
LOC_Os05g23690
OsAffx.4407.1.S1_at--1--2411Chr05:13521535..13521559 (25 bp)
AAACATCAAGATTCTCTCCGTGCAG
LOC_Os05g23690
Target Sequence 
AATTCGGGCAGGGATTGACTCGGACCTCGATGGGCTCATGGATACCGTGTTCCCCAACCTAAATGATAACCTTATGGACC
CAAACTACATCACATCTAGGGCCATAATGTCCACTCAGAATGGTTTCGTGGATCGAATAAACATGAAAATGATTGAGCGA
TTTCGAGGAGAGGTGATGACATATCATAGTTTTGATCGAGCAGAGGATGACCCTTGTAACTATTACCCGCTCGAATTCTT
GAACTCTCTAACTCCAAACGGTCTACCTCCACATGTGTTAAAGCTGAAGATAAACTGTCCCATCATGCTATTGAGGAACA
TTGACCCAGCCAACGAACTTTTTAACAGGACAAGGCTAGTGGTTCGTGGGTTCAGAAGAAATGCTATTGACGTGGAGATT
GTGGTATGGAAACATGCTGGTGTCTACCTCCCGAAGCCGGTGTTCTCTCATGGTCAGCTCTACATCGCGTTGTCTAGAGC
AACCTCTAGAACAAACATCAAGATTCTCTCCGTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis