Browse Element(s) Details


Os.16460.1.S1_at

Description gb:AK061205.1
DB_XREF= gi:32971223
TID=Os.16460.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16460 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B06, full insert sequence.
FL= gb:AK061205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2370011/11DNA-binding storekeeper protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein
LOC_Os05g23700Os.16460.1.S1_at11/115+13528318..13529695DNA-binding storekeeper protein, putative, expressed
LOC_Os05g23720Os.11624.1.S1_at11/115+13532510..13536360ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g23710OsAffx.14792.1.S1_at11/115+13535956..13537345hypothetical protein
LOC_Os05g23724NANA5+13541827..13542203NA
LOC_Os05g23740Os.9688.1.S1_at11/115+13543698..13549023Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16460.1.S1_at--1035--1891Chr05:13529164..13529188 (25 bp)
ACGTCATCCCGTGGTGGGTGCGCAT
LOC_Os05g23700
Os.16460.1.S1_at--919--3551Chr05:13529216..13529240 (25 bp)
CATCACGGTCAGCAACCTGTGGATT
LOC_Os05g23700
Os.16460.1.S1_at--292--1771Chr05:13529230..13529254 (25 bp)
ACCTGTGGATTTGGAACCTCTGGAA
LOC_Os05g23700
Os.16460.1.S1_at--544--5091Chr05:13529296..13529320 (25 bp)
GCACGTAGGTGTATCAAGCAACCAT
LOC_Os05g23700
Os.16460.1.S1_at--785--5671Chr05:13529417..13529441 (25 bp)
GACATAATTCTTTCATTCAGGTCAG
LOC_Os05g23700
Os.16460.1.S1_at--141--3591Chr05:13529491..13529515 (25 bp)
CATTCTGTCGCATGCATTGGGATTT
LOC_Os05g23700
Os.16460.1.S1_at--219--2471Chr05:13529539..13529563 (25 bp)
AACACTAATCACTCCTTGATGGCGA
LOC_Os05g23700
Os.16460.1.S1_at--839--1211Chr05:13529563..13529587 (25 bp)
AGTTCTTTGGAGTGATGGTTCCCTT
LOC_Os05g23700
Os.16460.1.S1_at--543--6251Chr05:13529576..13529600 (25 bp)
GATGGTTCCCTTTAGCATTTAGATA
LOC_Os05g23700
Os.16460.1.S1_at--102--7011Chr05:13529614..13529638 (25 bp)
GTACTGCTACATATACCTCACTTGA
LOC_Os05g23700
Os.16460.1.S1_at--161--7891Chr05:13529654..13529678 (25 bp)
GGTTCTTTGGAGTGATGGTTCCCTT
LOC_Os05g23700
Target Sequence 
ACGTCATCCCGTGGTGGGTGCGCATTTCTTGGATCGTNGTCGTCGGCACCGCCATCACGGTCAGCAACCTGTGGATTTGG
AACCTCTGGAAGGAGCTCTTCAGAGAACGGAAGCAGAGCATGACGAAGAAAAGCACGTAGGTGTATCAAGCAACCATGCT
GTAGCATAATCTATCGAAATTGCACTGATGATCAGATGATTCAGATGACGATGGTGGATATTTTGGATGGCATTTGTGGA
GAATTCTCTATATGACATAATTCTTTCATTCAGGTCAGAAATCTCAAGTCTAATTAATTAGTACTTAGTAGGGAATAGTC
CNATGGGCATTCTGTCGCATGCATTGGGATTTTACTTGTTGATCATTCAGCTAAGAACACTAATCACTCCTTGATGGCGA
GTTCTTTGGAGTGATGGTTCCCTTTAGCATTTAGATAAAAAAAAAATACTGTACTGCTACATATACCTCACTTGATGATT
ACCAATAGATGGTTCTTTGGAGTGATGGTTCCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis