Browse Element(s) Details


Os.9688.1.S1_at

Description gb:AK060410.1
DB_XREF= gi:32970428
TID=Os.9688.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-010-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D10, full insert sequence.
FL= gb:AK060410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2374011/11Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein
LOC_Os05g23700Os.16460.1.S1_at11/115+13528318..13529695DNA-binding storekeeper protein, putative, expressed
LOC_Os05g23720Os.11624.1.S1_at11/115+13532510..13536360ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g23710OsAffx.14792.1.S1_at11/115+13535956..13537345hypothetical protein
LOC_Os05g23724NANA5+13541827..13542203NA
LOC_Os05g23740Os.9688.1.S1_at11/115+13543698..13549023Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os05g23750Os.10827.1.S1_x_at10/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23750Os.46055.2.S1_x_at5/115+13566799..13570504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23760NANA5+13571224..13571676hypothetical protein
LOC_Os05g23770OsAffx.25936.1.S1_s_at9/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.7.S1_s_at8/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.2.S1_x_at6/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g23770OsAffx.25936.5.S1_x_at2/115+13573248..13576286transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0009532cellular_componentplastid stroma
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9688.1.S1_at--406--3491Chr05:13548445..13548469 (25 bp)
CAGGCAGAGTCTGTCATCTACCAGA
LOC_Os05g23740
Os.9688.1.S1_at--992--9431Chr05:13548491..13548515 (25 bp)
TCGGTGACAAGGTCCCAGGCGATGT
LOC_Os05g23740
Os.9688.1.S1_at--431--5751Chr05:13548540..13548564 (25 bp)
GACGGAGCTCAAGGACGCTGTTGCA
LOC_Os05g23740
Os.9688.1.S1_at--1077--10731Chr05:13548560..13548584 (25 bp)
TTGCAGGTGGCTCGACACAGACGAT
LOC_Os05g23740
Os.9688.1.S1_at--844--5771Chr05:13548579..13548603 (25 bp)
GACGATGAAGGATGCTCTCGCTGCT
LOC_Os05g23740
Os.9688.1.S1_at--874--9491Chr05:13548594..13548618 (25 bp)
TCTCGCTGCTCTGAACCAGGAAGTG
LOC_Os05g23740
Os.9688.1.S1_at--598--951Chr05:13548666..13548690 (25 bp)
AGGACCTACCCCAGGAGCTGATGCT
LOC_Os05g23740
Os.9688.1.S1_at--155--5451Chr05:13548806..13548830 (25 bp)
GAACGTTTCGCGACGAGTTTGAAAT
LOC_Os05g23740
Os.9688.1.S1_at--340--5091Chr05:13548879..13548903 (25 bp)
GCACCTTTGCTTCCTATTTGTGGAG
LOC_Os05g23740
Os.9688.1.S1_at--95--4891Chr05:13548957..13548981 (25 bp)
GCTTTCGTTGCTCATACATACATAT
LOC_Os05g23740
Os.9688.1.S1_at--124--9371Chr05:13548999..13549023 (25 bp)
TCGAGTTGGCAACTGCATGGTTCTC
LOC_Os05g23740
Target Sequence 
CAGGCAGAGTCTGTCATCTACCAGACTGAGAAACAATTGAAGGAGCTCGGTGACAAGGTCCCAGGCGATGTGAAGGGTAA
GGTTGAGGCGAANCTGACGGAGCTCAAGGACGCTGTTGCAGGTGGCTCGACACAGACGATGAAGGATGCTCTCGCTGCTC
TGAACCAGGAAGTGATGCAGCTGGGGCAGGCCCTCTACAGCCAGCAGGGTGCCCCAGGAGCAGGACCTACCCCAGGAGCT
GATGCTGCCGCTGGCTCTGCTGGCCCATCCGAGAAGCCAGGAGGCGAGGAAGGTGATGTCATCGATGCTGATTTTACAGA
CAGCCAATGAGCAGGAGAGTAGTTAGGTCCGAAATTTTAAGGAACGTTTCGCGACGAGTTTGAAATTTGTTCCACAAGAT
TGTAGGATCTGGGGTGTATCTTTTTGTTAGATGGGCACCTTTGCTTCCTATTTGTGGAGTTTTGGGCGGCGGAGTTTTTG
AGTTCTGGGAATTTCACTTCCAAATAGATGATGCTTTCGTTGCTCATACATACATATTCTTATGCCCNGTAGATTCGAGT
TGGCAACTGCATGGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis