Browse Element(s) Details


Os.11624.1.S1_at

Description gb:AK103134.1
DB_XREF= gi:32988343
TID=Os.11624.1
CNT=45
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11624 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133K22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120D07, full insert sequence.
FL= gb:AK061642.1 gb:AK103134.1 gb:AK103615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2372011/11ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23680OsAffx.26987.1.S1_at10/115+13510964..13519005hypothetical protein
LOC_Os05g23690OsAffx.4407.1.S1_at10/115+13521472..13522913hypothetical protein
LOC_Os05g23700Os.16460.1.S1_at11/115+13528318..13529695DNA-binding storekeeper protein, putative, expressed
LOC_Os05g23720Os.11624.1.S1_at11/115+13532510..13536360ADP,ATP carrier protein, mitochondrial precursor, putative, expressed
LOC_Os05g23710OsAffx.14792.1.S1_at11/115+13535956..13537345hypothetical protein
LOC_Os05g23724NANA5+13541827..13542203NA
LOC_Os05g23740Os.9688.1.S1_at11/115+13543698..13549023Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0015865biological_processpurine nucleotide transport
GO:0005739cellular_componentmitochondrion
GO:0005740cellular_componentmitochondrial envelope
GO:0005743cellular_componentmitochondrial inner membrane
GO:0016020cellular_componentmembrane
GO:0005471molecular_functionATP:ADP antiporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11624.1.S1_at--951--10711Chr05:13533056..13533080 (25 bp)
TTGCTTCATACCCAATCGACACTGT
LOC_Os05g23720
Os.11624.1.S1_at--875--9351Chr05:13533041..13533065 (25 bp)
TCGACACTGTTCGTCGTCGGATGAT
LOC_Os05g23720
Os.11624.1.S1_at--18--2211Chr05:13532990..13533014 (25 bp)
ACAACAGCTCCTTGGATGCGTTCAA
LOC_Os05g23720
Os.11624.1.S1_at--742--5331Chr05:13532941..13532965 (25 bp)
GAAGTCACTCTTCAAGGGCGCTGGT
LOC_Os05g23720
Os.11624.1.S1_at--407--2871Chr05:13532928..13532952 (25 bp)
AAGGGCGCTGGTGCTAACATTCTGC
LOC_Os05g23720
Os.11624.1.S1_at--853--1591Chr05:13532864..13532888 (25 bp)
AGCTGCAGGTGGTCGTCTTTGGTAA
LOC_Os05g23720
Os.11624.1.S1_at--549--151Chr05:13532774..13532798 (25 bp)
ATTAGGTGCTTTCGGATGCTGTTGC
LOC_Os05g23720
Os.11624.1.S1_at--734--5931Chr05:13532638..13532662 (25 bp)
GAGCAAGACGAGTTTTCCTAGTTGA
LOC_Os05g23720
Os.11624.1.S1_at--173--6271Chr05:13532565..13532589 (25 bp)
GATGTGGTTCCTAGTCGATTATATA
LOC_Os05g23720
Os.11624.1.S1_at--183--10431Chr05:13532538..13532562 (25 bp)
TTATCACTCCATTGTAGCATCTTCG
LOC_Os05g23720
Os.11624.1.S1_at--991--1531Chr05:13532523..13532547 (25 bp)
AGCATCTTCGGGATTTTGTCTTATC
LOC_Os05g23720
Target Sequence 
TTGCTTCATACCCAATCGACACTGTTCGTCGTCGGATGATGATGACATCTGGTGAGGCTGTCAAGTACAACAGCTCCTTG
GATGCGTTCAAGCAGATTGTTGCGAAGGAGGGTGCGAAGTCACTCTTCAAGGGCGCTGGTGCTAACATTCTGCGTGCTGT
TGCTGGTGCTGGTGTGCTTGCTGGATATGACAAGCTGCAGGTGGTCGTCTTTGGTAAGAAGTACGGTTCTGGTGGTGGCT
AAGACTAGATGATGATGATAAGCAGTGGGGAACTATGGACATATTAGGTGCTTTCGGATGCTGTTGCGTTTAAATAAATT
TAACGTATGGACACCGTTTACATGTTATTAGGCGTCAGGTGAGGTTTCTGAGTGTGTAAANTCGGTGGCAGATGCTTATG
CCTTTTTTGTTGGGGGATCGAGCAAGACGAGTTTTCCTAGTTGAAAACATGCCAAATTATTGTNCTGTGAAAGCGTTTCT
TGAGATTGTTATTGATGTGGTTCCTAGTCGATTATATAGATTATCACTCCATTGTAGCATCTTCGGGATTTTGTCTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis