Browse Element(s) Details


Os.49212.1.S2_at

Description gb:AK099037.1
DB_XREF= gi:32984246
TID=Os.49212.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49212 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132N07, full insert sequence.
FL= gb:AK068584.1 gb:AK072237.1 gb:AK099037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0908911/11myosin-like protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09050OsAffx.19563.1.S1_at10/1112+4728454..4729068hypothetical protein
LOC_Os12g09060OsAffx.31657.1.S1_at11/1112+4730999..4734236hypothetical protein
LOC_Os12g09070OsAffx.19564.1.S1_at11/1112+4741378..4742058hypothetical protein
LOC_Os12g09080OsAffx.19565.1.S1_at11/1112+4745614..4746722hypothetical protein
LOC_Os12g09089Os.49212.1.S2_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S1_a_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09089Os.49212.1.S3_at11/1112+4747015..4759819myosin-like protein, putative, expressed
LOC_Os12g09100NANA12+4759624..4760578hypothetical protein
LOC_Os12g09120Os.14936.1.S1_at11/1112+4762187..4774448mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os12g09130NANA12+4774852..4776983hypothetical protein
LOC_Os12g09140OsAffx.19566.1.S1_at10/1112+4780791..4781910hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49212.1.S2_at--12--5291Chr12:4749086..4749110 (25 bp)
GAATGTGACACCTTCGGATGATTGA
LOC_Os12g09089
Os.49212.1.S2_at--756--2711Chr12:4749056..4749080 (25 bp)
AAGCAGGCATTGTTCTTTTGGGAGA
LOC_Os12g09089
Os.49212.1.S2_at--25--5551Chr12:4748993..4749017 (25 bp)
GAAACTTTCAGCTGCCAGCTTGTCA
LOC_Os12g09089
Os.49212.1.S2_at--122--9831Chr12:4748962..4748986 (25 bp)
TAACAAGTTGCTCTCATCGTGTGCT
LOC_Os12g09089
Os.49212.1.S2_at--745--5551Chr12:4748892..4748916 (25 bp)
GAAAGCCTTTCTTAACTCTGTTTGA
LOC_Os12g09089
Os.49212.1.S2_at--26--4071Chr12:4748866..4748890 (25 bp)
CGAGGCCATGTTGTGTAGCGGTATT
LOC_Os12g09089
Os.49212.1.S2_at--660--10071Chr12:4748808..4748832 (25 bp)
TAGGACAAGTTCCATCAACCTTCTT
LOC_Os12g09089
Os.49212.1.S2_at--1120--3931Chr12:4748774..4748798 (25 bp)
CGGATACTGTACCTGCTTCATTTTG
LOC_Os12g09089
Os.49212.1.S2_at--724--8951Chr12:4748734..4748758 (25 bp)
TGAAATGAAGATCTCCCAGGTCCCC
LOC_Os12g09089
Os.49212.1.S2_at--393--7411Chr12:4748707..4748731 (25 bp)
GTGATATCACATCTTCTCTGAAGCT
LOC_Os12g09089
Os.49212.1.S2_at--28--8531Chr12:4748665..4748689 (25 bp)
TGGACTTGTGTCCTGAACCGAACAA
LOC_Os12g09089
Target Sequence 
GAATGTGACACCTTCGGATGATTGATTCATAAGCAGGCATTGTTCTTTTGGGAGAAAGGATAGTAGATATTGATTATGTA
CTACGGAGCTGTAGAAACTTTCAGCTGCCAGCTTGTCAAGATTATAACAAGTTGCTCTCATCGTGTGCTGCATTCAGGAA
AGATGTGAGGCAGGAACTATTATAAGGTTGAACTGAAAGCCTTTCTTAACTCTGTTTGATCGAGGCCATGTTGTGTAGCG
GTATTGATGATGATGGTTCTTATGGAAAACGAAGAGACTAGGACAAGTTCCATCAACCTTCTTGATAANCAAGCGGATAC
TGTACCTGCTTCATTTTGGTTAAGAGTGTTNCTTGAAATGAAGATCTCCCAGGTCCCCATGTGATATCACATCTTCTCTG
AAGCTTGTATATATAACTGAAATGGACTTGTGTCCTGAACCGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49212.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis