Browse Element(s) Details


Os.49215.1.S1_at

Description gb:AK103265.1
DB_XREF= gi:32988474
TID=Os.49215.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124G13, full insert sequence.
FL= gb:AK103265.1 gb:AK105421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2045011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20430Os.53895.1.S1_at11/113+11538995..11541397Pre-SET motif family protein, expressed
LOC_Os03g20440Os.18622.1.S1_at11/113+11547303..11548353VQ motif family protein, expressed
LOC_Os03g20450Os.49215.1.S1_at11/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20450Os.49215.1.S2_at6/113+11564133..11568807Leucine Rich Repeat family protein, expressed
LOC_Os03g20460Os.54617.1.S1_at11/113+11574287..11577890Guanylate kinase family protein, expressed
LOC_Os03g20470Os.20198.1.S1_at11/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20470Os.54649.1.S1_at1/113+11578668..11581709Membrane steroid binding protein 1, putative, expressed
LOC_Os03g20480Os.11156.1.S1_at11/113+11582077..11582711expressed protein
LOC_Os03g20490NANA3+11582947..11587267retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g20500Os.5812.1.S1_at11/113+11592064..11593574F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49215.1.S1_at--100--91Chr03:11565862..11565886 (25 bp)
ATTCCAGAGGCGCTCTTTCGACAGA
LOC_Os03g20450
Os.49215.1.S1_at--145--5831Chr03:11565885..11565909 (25 bp)
GACCTCCATGGTGTTGACTGAACTT
LOC_Os03g20450
Os.49215.1.S1_at--273--8931Chr03:11565909..11565933 (25 bp)
TGACCTCAGCTGCAATCAACTTACA
LOC_Os03g20450
Os.49215.1.S1_at--978--2811Chr03:11566492..11566516 (25 bp)
AAGTACCTGAATCTGTCATCCAACA
LOC_Os03g20450
Os.49215.1.S1_at--957--8151Chr03:11566525..11566549 (25 bp)
GGAACTTTGCCCATCACATTTGGGA
LOC_Os03g20450
Os.49215.1.S1_at--381--6151Chr03:11566692..11566716 (25 bp)
GAGGTTGACTTCGTTGAGGATTTCC
LOC_Os03g20450
Os.49215.1.S1_at--183--1011Chr03:11566708..11566732 (25 bp)
AGGATTTCCGACAACTTGCTTGCAG
LOC_Os03g20450
Os.49215.1.S1_at--367--10431Chr03:11566758..11566782 (25 bp)
TTATCCTGAGCTGATTTCCATCGAC
LOC_Os03g20450
Os.49215.1.S1_at--1047--8091Chr03:11566804..11566828 (25 bp)
GGACCATTGCCTGGAAATCTGTTTA
LOC_Os03g20450
Os.49215.1.S1_at--879--5531Chr03:11566862..11566886 (25 bp)
GAAACAGCTTTGCAGGGACTCTTCC
LOC_Os03g20450
Os.49215.1.S1_at--808--6631Chr03:11566929..11566953 (25 bp)
GTTAGTTCTCCCTGTACAAACTTCA
LOC_Os03g20450
Target Sequence 
ATTCCAGAGGCGCTCTTTCGACAGACCTCCATGGTGTTGACTGAACTTGACCTCAGCTGCAATCAACTTACAGGTCCAAT
TAGACGTGTAACATCAATGAACTTAAAGTACCTGAATCTGTCATCCAACAGCCTTCAGGGAACTTTGCCCATCACATTTG
GGAGCTGTTCAGTTGTTGATCTGAGTAGAAACATGCTTTCAGGGAACCTATCAGTTATCCGAACTTGGGGAAATTATATT
GAGACGGTCGATTTGACCTCAAATCGGTTAACAGGAACATGGCCAAATGAGACAACCCAGTTTTTGAGGTTGACTTCGTT
GAGGATTTCCGACAACTTGCTTGCAGGAGAACTACCAACTGTTATTGGAACTTATCCTGAGCTGATTTCCATCGACTTGA
GTCTCAATCAGCTTCATGGACCATTGCCTGGAAATCTGTTTACAGCAGTCAAACTGACCTATCTAAATCTGTCAGGAAAC
AGCTTTGCAGGGACTCTTCCTCTTCCTAATTCTGAAGCAAAGAGCTCAACTTTTATAGACTTGTTAGTTCTCCCTGTACA
AACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis