Browse Element(s) Details


Os.49217.1.S1_at

Description gb:AK121719.1
DB_XREF= gi:37991342
TID=Os.49217.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079O20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079O20, full insert sequence.
FL= gb:AK121719.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1430011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14270OsAffx.18167.2.S1_at11/113+7746115..7747754LOB domain protein 18, putative
LOC_Os03g14280Os.6658.1.S1_at10/113+7752775..7758918Clp amino terminal domain containing protein, expressed
LOC_Os03g14290Os.47951.1.S1_at11/113+7761510..7763848expressed protein
LOC_Os03g14300Os.49217.1.S1_at11/113+7767861..7768646expressed protein
LOC_Os03g14310Os.17054.1.S1_at11/113+7771712..7774776expressed protein
LOC_Os03g14320OsAffx.12857.1.S1_at10/113+7775664..7777983hypothetical protein
LOC_Os03g14330NANA3+7780310..7783263expressed protein
LOC_Os03g14349NANA3+7784513..7788872retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49217.1.S1_at--1143--4471Chr03:7768351..7768375 (25 bp)
GCCGTAAGATTCCACCAGATGCGTT
LOC_Os03g14300
Os.49217.1.S1_at--133--371Chr03:7768391..7768415 (25 bp)
ATCAATAGTGCCTGCGCTTGCGTTC
LOC_Os03g14300
Os.49217.1.S1_at--125--4931Chr03:7768406..7768430 (25 bp)
GCTTGCGTTCAGTTAGCGCTGTGAT
LOC_Os03g14300
Os.49217.1.S1_at--783--1651Chr03:7768420..7768444 (25 bp)
AGCGCTGTGATCTTTCAGTAGCAAA
LOC_Os03g14300
Os.49217.1.S1_at--494--1191Chr03:7768454..7768478 (25 bp)
AGTAGCAGTAGCTTGTGTCGTCGCT
LOC_Os03g14300
Os.49217.1.S1_at--613--7231Chr03:7768473..7768497 (25 bp)
GTCGCTCTCTGCATAAGTGTGCTTG
LOC_Os03g14300
Os.49217.1.S1_at--966--10771Chr03:7768501..7768525 (25 bp)
TTGTTCTTCTATGTTCCCGTGTTCT
LOC_Os03g14300
Os.49217.1.S1_at--52--4351Chr03:7768527..7768551 (25 bp)
CCACGGTTCCACTGTTCTTGTTGTT
LOC_Os03g14300
Os.49217.1.S1_at--230--9731Chr03:7768559..7768583 (25 bp)
TCAAGGTGTGTAGCCGACTCGTGCA
LOC_Os03g14300
Os.49217.1.S1_at--835--4511Chr03:7768571..7768595 (25 bp)
GCCGACTCGTGCAATTACATTATCT
LOC_Os03g14300
Os.49217.1.S1_at--486--3591Chr03:7768588..7768612 (25 bp)
CATTATCTTCATTTCGACCCTGTTA
LOC_Os03g14300
Target Sequence 
GCCGTAAGATTCCACCAGATGCGTTTCTTTCGGTCCGCGCATCAATAGTGCCTGCGCTTGCGTTCAGTTAGCGCTGTGAT
CTTTCAGTAGCAAACTACTAGCAAGTAGCAGTAGCTTGTGTCGTCGCTCTCTGCATAAGTGTGCTTGCTTTTGTTCTTCT
ATGTTCCCGTGTTCTTCCACGGTTCCACTGTTCTTGTTGTTGAAGGCGTCAAGGTGTGTAGCCGACTCGTGCAATTACAT
TATCTTCATTTCGACCCTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis