Browse Element(s) Details


Os.49225.1.S2_at

Description gb:AB013451.1
DB_XREF= gi:7415940
GEN=PibH8
TID=Os.49225.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49225 (NCBI UniGene Cluster)
UG_TITLE=PibH8 mRNA, complete cds
DEF=Oryza sativa PibH8 mRNA, complete cds.
FL= gb:AB013451.1 gb:AK065372.1 gb:AK065693.1 gb:AK099855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4270011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed
LOC_Os08g42680OsAffx.29634.1.S1_at11/118+26848171..26849460hypothetical protein
LOC_Os08g42690Os.55763.1.S1_at4/118+26849865..26853609Ankyrin repeat domain protein 2, putative, expressed
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49225.1.S2_at--164--1431Chr08:26864230..26864254 (25 bp)
AGAACTCTGTTTCGGTCCCGAGCGT
LOC_Os08g42700
Os.49225.1.S2_at--475--5891Chr08:26864249..26864273 (25 bp)
GAGCGTTTCACAGGTCTGACGTCAT
LOC_Os08g42700
Os.49225.1.S2_at--979--7171Chr08:26864262..26864286 (25 bp)
GTCTGACGTCATTGGAGCTTCTCAA
LOC_Os08g42700
Os.49225.1.S2_at--950--5911Chr08:26864276..26864300 (25 bp)
GAGCTTCTCAATTGGGAGAGCCTCA
LOC_Os08g42700
Os.49225.1.S2_at--727--3711Chr08:26864331..26864355 (25 bp)
CTAAACTGAAGGTGCTACTGCTGCA
LOC_Os08g42700
Os.49225.1.S2_at--1143--1971Chr08:26864347..26864371 (25 bp)
ACTGCTGCACTACTGTTGGCAAATA
LOC_Os08g42700
Os.49225.1.S2_at--131--8771Chr08:26864523..26864547 (25 bp)
TGTAGTCCAAAACTGCCACTGGCTT
LOC_Os08g42700
Os.49225.1.S2_at--1120--8291Chr08:26864543..26864567 (25 bp)
GGCTTTCATAGAATTGCTCCCTCCA
LOC_Os08g42700
Os.49225.1.S2_at--910--8651Chr08:26864578..26864602 (25 bp)
TGTGGCATTGTGTCATTCAGGTAGT
LOC_Os08g42700
Os.49225.1.S2_at--1151--9471Chr08:26864666..26864690 (25 bp)
TCTCCTCATGTACCATACGCTTTAA
LOC_Os08g42700
Os.49225.1.S2_at--824--6871Chr08:26864737..26864761 (25 bp)
GTACCTTTACCATTTACTTCCAGTG
LOC_Os08g42700
Target Sequence 
AGAACTCTGTTTCGGTCCCGAGCGTTTCACAGGTCTGACGTCATTGGAGCTTCTCAATTGGGAGAGCCTCAAGTCGGTGA
AATTTGAACGAGGAGCTACTCCTAAACTGAAGGTGCTACTGCTGCACTACTGTTGGCAAATACACAATGGTGGGTTTTCT
GGCATAGAAACTCTCTCGACCCTAAAGGAAGTTTCAATCTTGGGCTATAATTATGACCAGACCTACACCGAATTCAAGGA
ACAATTACAGAAGCAACTTGACATGAACAAGAACAAACCAAATCTAAGTATTCTGTAGTCCAAAACTGCCACTGGCTTTC
ATAGAATTGCTCCCTCCACACTCAAATATGTGGCATTGTGTCATTCAGGTAGTGTTTCAAATTTCAAAATCATGTATAAT
TATGACAATTTCAACATTAAGTTTTACTCCCTTTTTTCTCCTCATGTACCATACGCTTTAAGTAATTAAGTGTATAAGTT
TAGTTTAGTTTCATGGTGAAAATTGTAGTACCTTTACCATTTACTTCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49225.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis