Browse Element(s) Details


Os.49329.1.S1_at

Description gb:AK121163.1
DB_XREF= gi:37990786
TID=Os.49329.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080H22, full insert sequence.
FL= gb:AK121163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3549011/11MLO-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35450NANA2+21306134..21307006DNA-repair protein XRCC3, putative
LOC_Os02g35460OsAffx.12360.1.S1_at11/112+21309298..21310064hypothetical protein
LOC_Os02g35470Os.15189.1.S1_at11/112+21314076..21319253Calmodulin-binding protein, putative, expressed
LOC_Os02g35480Os.54711.1.S1_at11/112+21319579..21323853expressed protein
LOC_Os02g35490Os.49329.1.S1_at11/112+21324602..21329367MLO-like protein 1, putative, expressed
LOC_Os02g35500Os.12367.1.S1_at10/112+21338394..21342698NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os02g35510OsAffx.24585.1.S1_at10/112+21345243..21346695hypothetical protein
LOC_Os02g35520Os.40360.1.S1_at9/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40855.5.S1_x_at8/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40360.1.S1_x_at4/112+21348298..21350621hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0016021cellular_componentintegral to membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49329.1.S1_at--240--7271Chr02:21325100..21325124 (25 bp)
GTCCTTTTCAAATTGTGATCTTCTC
LOC_Os02g35490
Os.49329.1.S1_at--142--3011Chr02:21325068..21325092 (25 bp)
AATGACATCATATCCTTTACACGAT
LOC_Os02g35490
Os.49329.1.S1_at--645--8571Chr02:21325013..21325037 (25 bp)
TGGTACTAATTTCTTTTGTCCAACT
LOC_Os02g35490
Os.49329.1.S1_at--1073--7771Chr02:21324942..21324966 (25 bp)
GGTCGAAGGACTTGCCAATTGGGCT
LOC_Os02g35490
Os.49329.1.S1_at--265--31Chr02:21324925..21324949 (25 bp)
ATTGGGCTCAAAATGCTAGAAGGCG
LOC_Os02g35490
Os.49329.1.S1_at--1068--7751Chr02:21324869..21324893 (25 bp)
GGTGACTCACCGGTTGACGAATCGA
LOC_Os02g35490
Os.49329.1.S1_at--1043--5331Chr02:21324836..21324860 (25 bp)
GAAGTTCAAATGACAAGCCCACCAA
LOC_Os02g35490
Os.49329.1.S1_at--88--1671Chr02:21324821..21324845 (25 bp)
AGCCCACCAACAAAGTCAGTTCAGC
LOC_Os02g35490
Os.49329.1.S1_at--794--5171Chr02:21324798..21324822 (25 bp)
GCAAGGGACTGCAAGACTAATCTAA
LOC_Os02g35490
Os.49329.1.S1_at--924--7071Chr02:21324695..21324719 (25 bp)
GTCAATTTCCACATTAGTTTTCATG
LOC_Os02g35490
Os.49329.1.S1_at--736--4991Chr02:21324646..21324670 (25 bp)
GCATGTATGTTATTCCACGATCTAT
LOC_Os02g35490
Target Sequence 
GTCCTTTTCAAATTGTGATCTTCTCACATATTAATGACATCATATCCTTTACACGATACTTATCTAGCTATTTTTCTTAA
TGTTTTATGGTACTAATTTCTTTTGTCCAACTTGAAGATGGGAACTTCATTCAAAAAAGTAATATTTGATGAGAATGTGG
TCGAAGGACTTGCCAATTGGGCTCAAAATGCTAGAAGGCGTAATGCAAGAGCAGCAAGAACACAAAATGTTGGTGACTCA
CCGGTTGACGAATCGAATGTTGGTGAAGTTCAAATGACAAGCCCACCAACAAAGTCAGTTCAGCAAGGGACTGCAAGACT
AATCTAAGCATATTGATGACAATGCCAATACTAACATTTTTGCTAGTTGTTTTTTCTTTCTTTCGGTGGGAATTATGATA
AGTATGTCAATTTCCACATTAGTTTTCATGTTGTTTGTAAATGATTTTGCTTATGCATGTATGTTATTCCACGATCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis