Browse Element(s) Details


OsAffx.24585.1.S1_at

Description tigr:9630.m03381
TID=OsAffx.24585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3551010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35480Os.54711.1.S1_at11/112+21319579..21323853expressed protein
LOC_Os02g35490Os.49329.1.S1_at11/112+21324602..21329367MLO-like protein 1, putative, expressed
LOC_Os02g35500Os.12367.1.S1_at10/112+21338394..21342698NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os02g35510OsAffx.24585.1.S1_at10/112+21345243..21346695hypothetical protein
LOC_Os02g35520Os.40360.1.S1_at9/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40855.5.S1_x_at8/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40360.1.S1_x_at4/112+21348298..21350621hypothetical protein
LOC_Os02g35530OsAffx.2870.1.S1_at11/112+21359746..21360921Kelch motif family protein
LOC_Os02g35540OsAffx.24586.1.S1_at11/112+21367767..21370415expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24585.1.S1_at--955--5091Chr02:21346641..21346665 (25 bp)
GCACGCACTACTGCGTTATACATGT
LOC_Os02g35510
OsAffx.24585.1.S1_at--1013--9911Chr02:21346633..21346657 (25 bp)
TACTGCGTTATACATGTATCCTGCA
LOC_Os02g35510
OsAffx.24585.1.S1_at--414--6791Chr02:21346627..21346651 (25 bp)
GTTATACATGTATCCTGCATTCTCT
LOC_Os02g35510
OsAffx.24585.1.S1_at--1009--9871Chr02:21346623..21346647 (25 bp)
TACATGTATCCTGCATTCTCTAACA
LOC_Os02g35510
OsAffx.24585.1.S1_at--16--6911Chr02:21346622..21346642 (21 bp)
GTATCCTGCATTCTCTAACAGAACA
LOC_Os02g35510
OsAffx.24585.1.S1_at--1018--10571NONE
TTCTCTAACAGAACAACGCAACAGA
NONE
OsAffx.24585.1.S1_at--313--2591Chr02:21345626..21345650 (25 bp)
AACGCAACAGAATGTCATCCCTATA
LOC_Os02g35510
OsAffx.24585.1.S1_at--410--8731Chr02:21345614..21345638 (25 bp)
TGTCATCCCTATAAACGCATGCACG
LOC_Os02g35510
OsAffx.24585.1.S1_at--155--9313Chr12:17769663..17769683 (21 bp)
TCCCTATAAACGCATGCACGCACGT
NONE
OsAffx.24585.1.S1_at--971--2591Chr02:21345601..21345625 (25 bp)
AACGCATGCACGCACGTAAATCGTA
LOC_Os02g35510
OsAffx.24585.1.S1_at--791--651Chr02:21345596..21345620 (25 bp)
ATGCACGCACGTAAATCGTACCCCT
LOC_Os02g35510
Target Sequence 
GCACGCACTACTGCGTTATACATGTATCCTGCATTCTCTAACAGAACAACGCAACAGAATGTCATCCCTATAAACGCATG
CACGCACGTAAATCGTACCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis