Browse Element(s) Details


Os.12367.1.S1_at

Description gb:AB110167.1
DB_XREF= gi:32352131
TID=Os.12367.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.12367 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29037 gamma hydroxybutyrate dehydrogenase-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 12FPR024.
FL= gb:AY224558.1 gb:AK071800.1 gb:AB110167.1 gb:AK109435.2 gb:AK104168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3550010/11NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35470Os.15189.1.S1_at11/112+21314076..21319253Calmodulin-binding protein, putative, expressed
LOC_Os02g35480Os.54711.1.S1_at11/112+21319579..21323853expressed protein
LOC_Os02g35490Os.49329.1.S1_at11/112+21324602..21329367MLO-like protein 1, putative, expressed
LOC_Os02g35500Os.12367.1.S1_at10/112+21338394..21342698NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os02g35510OsAffx.24585.1.S1_at10/112+21345243..21346695hypothetical protein
LOC_Os02g35520Os.40360.1.S1_at9/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40855.5.S1_x_at8/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40360.1.S1_x_at4/112+21348298..21350621hypothetical protein
LOC_Os02g35530OsAffx.2870.1.S1_at11/112+21359746..21360921Kelch motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0006098biological_processpentose-phosphate shunt
GO:0003824molecular_functioncatalytic activity
GO:0004616molecular_functionphosphogluconate dehydrogenase (decarboxylating) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12367.1.S1_at--446--3011Chr02:21341925..21341949 (25 bp)
AATGCTTTGTCTGAGGGACTCTCTC
LOC_Os02g35500
Os.12367.1.S1_at--875--5711Chr02:21341941..21341965 (25 bp)
GACTCTCTCTGGCTGATAACAGTGG
LOC_Os02g35500
Os.12367.1.S1_at--1026--4551Chr02:21342092..21342116 (25 bp)
GCGCCATCGCGAATCCAATGTTCAA
LOC_Os02g35500
Os.12367.1.S1_at--133--8791Chr02:21342110..21342134 (25 bp)
TGTTCAAGCTGAAAGGGCCCTCGAT
LOC_Os02g35500
Os.12367.1.S1_at--641--10811Chr02:21342193..21342217 (25 bp)
TTGGCACTTGCCCTAGGAGACGAGA
LOC_Os02g35500
Os.12367.1.S1_at--750--5971Chr02:21342214..21342238 (25 bp)
GAGAACGCTGTCTCCATGCCAGTGG
LOC_Os02g35500
Os.12367.1.S1_at--1153--1071NONE
AGTGGCAGCTGCTTCCAACGAGGCG
NONE
Os.12367.1.S1_at--708--8091Chr02:21342387..21342411 (25 bp)
GGACCTGGATTTCTCAGCGGTTTAC
LOC_Os02g35500
Os.12367.1.S1_at--796--5011Chr02:21342497..21342521 (25 bp)
GCAGGTTTGCTACAGTGATCGGCAT
LOC_Os02g35500
Os.12367.1.S1_at--1047--5411Chr02:21342523..21342547 (25 bp)
GAACCACGCAGCATATGTCATCGTA
LOC_Os02g35500
Os.12367.1.S1_at--1026--4911Chr02:21342602..21342626 (25 bp)
GCTTGCGTGAACTTCATCCCAATAA
LOC_Os02g35500
Target Sequence 
AATGCTTTGTCTGAGGGACTCTCTCTGGCTGATAACAGTGGTTTGAGCCCCCAGACACTTCTTGATGTCCTGGACCTTGG
CGCCATCGCGAATCCAATGTTCAAGCTGAAAGGGCCCTCGATGCTGCAAGGCAGCTACAACCCTGCATTTCCCCTGAAAC
ACCAGCAGAAGGATATGAGGTTGGCACTTGCCCTAGGAGACGAGAACGCTGTCTCCATGCCAGTGGCAGCTGCTTCCAAC
GAGGCGTTCAAGAAAGCAAGAAGCTTGGGACTAGGGGACCTGGATTTCTCAGCGGTTTACGAGGTACTGAAGGGCGCAGG
TGGCTCAGGCAAGGCGTGAAACTCTGAACGCTAGAATCCATTCTTCAGAATCTGCCCATTGCCGTGCAGGTTTGCTACAG
TGATCGGCATCGAACCACGCAGCATATGTCATCGTATTGATACTACTGGGTAACCAGTGTGAACGATGTAGTTGCAGGTT
AAGTACTACAGCTTGCGTGAACTTCATCCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12367.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis