Browse Element(s) Details


OsAffx.2870.1.S1_at

Description tigr:9630.m03383
TID=OsAffx.2870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kelch motif, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3553011/11Kelch motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35500Os.12367.1.S1_at10/112+21338394..21342698NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os02g35510OsAffx.24585.1.S1_at10/112+21345243..21346695hypothetical protein
LOC_Os02g35520Os.40360.1.S1_at9/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40855.5.S1_x_at8/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40360.1.S1_x_at4/112+21348298..21350621hypothetical protein
LOC_Os02g35530OsAffx.2870.1.S1_at11/112+21359746..21360921Kelch motif family protein
LOC_Os02g35540OsAffx.24586.1.S1_at11/112+21367767..21370415expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2870.1.S1_at--534--8351Chr02:21360340..21360364 (25 bp)
GGCGGCCACGACGAGTCCAAGAACG
LOC_Os02g35530
OsAffx.2870.1.S1_at--541--1591Chr02:21360449..21360473 (25 bp)
AGCTCGTCGCAAACCCGGGCCGCGT
LOC_Os02g35530
OsAffx.2870.1.S1_at--141--1091Chr02:21360506..21360530 (25 bp)
AGGGCGCGTTCAAGAAGACCGCCGA
LOC_Os02g35530
OsAffx.2870.1.S1_at--848--4031Chr02:21360512..21360536 (25 bp)
CGTTCAAGAAGACCGCCGAGCGCTA
LOC_Os02g35530
OsAffx.2870.1.S1_at--294--4073Chr02:21360576..21360600 (25 bp)
CGAGGGAGACATGGCGCCGAACACC
LOC_Os02g35530
OsAffx.2870.1.S1_at--229--4071Chr02:21360593..21360617 (25 bp)
CGAACACCGCGGAGACGTGCCTTGC
LOC_Os02g35530
OsAffx.2870.1.S1_at--422--2471Chr02:21360595..21360619 (25 bp)
AACACCGCGGAGACGTGCCTTGCCG
LOC_Os02g35530
OsAffx.2870.1.S1_at--901--5751Chr02:21360703..21360727 (25 bp)
GACGGGCCGCCAGGCATGAAGGCGT
LOC_Os02g35530
OsAffx.2870.1.S1_at--697--891Chr02:21360722..21360746 (25 bp)
AGGCGTGCGTGAAGGCGGTCGGCGC
LOC_Os02g35530
OsAffx.2870.1.S1_at--898--1931Chr02:21360800..21360824 (25 bp)
ACGGCAAGCAGTACGCGGCGTGGGT
LOC_Os02g35530
OsAffx.2870.1.S1_at--220--1171Chr02:21360809..21360833 (25 bp)
AGTACGCGGCGTGGGTGATGGAGGA
LOC_Os02g35530
Target Sequence 
GGCGGCCACGACGAGTCCAAGAACGCGCTCCGCTCCGCCTACGCGTACGACGTCGCCTCCGACGCATGGCGCGCGCTCCC
GGACATGTCCGAGGAGCGCGACGAGCCGCAGCTCGTCGCAAACCCGGGCCGCGTGCTCGCCGCCAGCGGCTACCCGACCG
ACGCCCAGGGCGCGTTCAAGAAGACCGCCGAGCGCTACACCACCACCACAACCGGCGACGCAACCGCCTGGTCCAGCGAG
GGAGACATGGCGCCGAACACCGCGGAGACGTGCCTTGCCGCGGTCGGCGGCAAGGTGTGGGCCGTCGGCGCCGGGAAGGG
CGGCGTGCGGGAGTGGGACGGGGGCGCGTGGAGGGACGTGGCGGACGGGCCGCCAGGCATGAAGGCGTGCGTGAAGGCGG
TCGGCGCGGGCGACGGCGACGGCGCCGCCATGTTCGTGTTCGTGTTCGGCAAGGTGGAGGACGGCAAGCAGTACGCGGCG
TGGGTGATGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis