Browse Element(s) Details


OsAffx.24586.1.S1_at

Description tigr:9630.m03384
TID=OsAffx.24586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3554011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35510OsAffx.24585.1.S1_at10/112+21345243..21346695hypothetical protein
LOC_Os02g35520Os.40360.1.S1_at9/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40855.5.S1_x_at8/112+21348298..21350621hypothetical protein
LOC_Os02g35520Os.40360.1.S1_x_at4/112+21348298..21350621hypothetical protein
LOC_Os02g35530OsAffx.2870.1.S1_at11/112+21359746..21360921Kelch motif family protein
LOC_Os02g35540OsAffx.24586.1.S1_at11/112+21367767..21370415expressed protein
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24586.1.S1_at--816--1812Chr02:20212445..20212464 (20 bp)
ACGCCGTGTCGTGTATCCGTGGAAC
NONE
OsAffx.24586.1.S1_at--592--7431Chr02:21369166..21369190 (25 bp)
GTGTATCCGTGGAACGCCCCTGTGC
LOC_Os02g35540
OsAffx.24586.1.S1_at--940--2111Chr02:21369140..21369164 (25 bp)
ACAGGCATTCCCACTGGCGAGGTGC
LOC_Os02g35540
OsAffx.24586.1.S1_at--1017--91Chr02:21369134..21369158 (25 bp)
ATTCCCACTGGCGAGGTGCTCTATC
LOC_Os02g35540
OsAffx.24586.1.S1_at--87--1051Chr02:21369121..21369145 (25 bp)
AGGTGCTCTATCTGCGGCGCTGTAG
LOC_Os02g35540
OsAffx.24586.1.S1_at--779--8751Chr02:21369101..21369125 (25 bp)
TGTAGCGCTCCGGTATTCGTTTTGT
LOC_Os02g35540
OsAffx.24586.1.S1_at--620--91Chr02:21369087..21369111 (25 bp)
ATTCGTTTTGTTGTAGCCGCATTCT
LOC_Os02g35540
OsAffx.24586.1.S1_at--55--6651Chr02:21369078..21369102 (25 bp)
GTTGTAGCCGCATTCTTTGCGGGAC
LOC_Os02g35540
OsAffx.24586.1.S1_at--900--91Chr02:21369067..21369091 (25 bp)
ATTCTTTGCGGGACATGCGGCTGCC
LOC_Os02g35540
OsAffx.24586.1.S1_at--86--7631Chr02:21369058..21369082 (25 bp)
GGGACATGCGGCTGCCCATGTGACC
LOC_Os02g35540
OsAffx.24586.1.S1_at--5--9251Chr02:21369018..21369042 (25 bp)
TCCTACCGCCGCCTGAGTTCTTTGG
LOC_Os02g35540
Target Sequence 
ACGCCGTGTCGTGTATCCGTGGAACGCCCCTGTGCCACAGGCATTCCCACTGGCGAGGTGCTCTATCTGCGGCGCTGTAG
CGCTCCGGTATTCGTTTTGTTGTAGCCGCATTCTTTGCGGGACATGCGGCTGCCCATGTGACCCACCCGCCGTCGTCGTC
CTACCGCCGCCTGAGTTCTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis