Browse Element(s) Details


Os.50551.1.S1_at

Description gb:AK121794.1
DB_XREF= gi:37991417
TID=Os.50551.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013108A18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033095G22, full insert sequence.
FL= gb:AK121794.1 gb:AK067547.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3556011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35540OsAffx.24586.1.S1_at11/112+21367767..21370415expressed protein
LOC_Os02g35550OsAffx.2871.1.S1_at11/112+21387493..21388078hypothetical protein
LOC_Os02g35560Os.50551.1.S1_at11/112+21390486..21393861F-box domain containing protein, expressed
LOC_Os02g35570Os.38764.1.S1_x_at7/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35570Os.45173.1.S1_x_at2/112+21394498..21396414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g35580NANA2+21399799..21402998retrotransposon protein, putative, unclassified
LOC_Os02g35590Os.6851.2.S1_x_at11/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35590Os.6851.1.S1_at9/112+21404946..21407815Glutathione S-transferase zeta-class 1, putative, expressed
LOC_Os02g35600Os.140.1.A1_s_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35600Os.49533.1.S1_at11/112+21408016..21411327PHD finger protein, putative, expressed
LOC_Os02g35610Os.18440.1.S1_at11/112+21412164..21415259expressed protein
LOC_Os02g35610Os.11016.1.S1_x_at11/112+21412164..21415259expressed protein
LOC_Os02g35620NANA2+21414355..21416497expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50551.1.S1_at--1068--7271Chr02:21391042..21391066 (25 bp)
GTGCCTATGGCAGTTGACCTTACAG
LOC_Os02g35560
Os.50551.1.S1_at--339--2491Chr02:21390900..21390924 (25 bp)
AACAGCGCACTGGAGGTCATCTTAA
LOC_Os02g35560
Os.50551.1.S1_at--1077--2851Chr02:21390877..21390901 (25 bp)
AAGTGCCACATTACCAGATGCGAAG
LOC_Os02g35560
Os.50551.1.S1_at--145--10591Chr02:21390836..21390860 (25 bp)
TTCTCCGTGGAAACTATCTATGGCT
LOC_Os02g35560
Os.50551.1.S1_at--23--7371Chr02:21390807..21390831 (25 bp)
GTGAGAACTTTGCTACACCTCCAAG
LOC_Os02g35560
Os.50551.1.S1_at--337--8191Chr02:21390771..21390795 (25 bp)
GGAAGAATCTGTTGTCCTCCAGACA
LOC_Os02g35560
Os.50551.1.S1_at--699--2311Chr02:21390713..21390737 (25 bp)
AAAGGTTATGCCTGTGGTTCCTATG
LOC_Os02g35560
Os.50551.1.S1_at--806--1351Chr02:21390678..21390702 (25 bp)
AGAGCCTAACTTATTATCCCTTTGC
LOC_Os02g35560
Os.50551.1.S1_at--162--4771Chr02:21390655..21390679 (25 bp)
GCTGCCCGAGCGAGAGTGTTGTTTA
LOC_Os02g35560
Os.50551.1.S1_at--487--1271Chr02:21390589..21390613 (25 bp)
AGATAGGTCCTCCATGTTTGGCCAT
LOC_Os02g35560
Os.50551.1.S1_at--1039--8431Chr02:21390570..21390594 (25 bp)
GGCCATACCATGTCACCAAGTTTTT
LOC_Os02g35560
Target Sequence 
GTGCCTATGGCAGTTGACCTTACAGATGGAAGGATTCTGCTGAATACTGGGAGGAAGCTTGGTTTATATAATCCATTTGA
TCAAACAATTGAAAACTTGCTTGCACTTGATCAGGTGTCACTTGCCACACCTAAAGTGCAGCAACAGCGCACTGGAGGTC
ATCTTAAGTGCCACATTACCAGATGCGAAGATGTTCCTAGGAAGTTTTCTCCGTGGAAACTATCTATGGCTCCATGTGAG
AACTTTGCTACACCTCCAAGTGCCTCATCAGGGAAGAATCTGTTGTCCTCCAGACACCAATATGTGAAGGCACTAAATAG
TGTGAGCCCAAAGGTTATGCCTGTGGTTCCTATGTTGTATGAGGAGAGCCTAACTTATTATCCCTTTGCTGCCCGAGCGA
GAGTGTTGTTTAGTTGAAGTGGTACCTTTGTCAAATCTACCATTTCATGTGTCAGATAGGTCCTCCATGTTTGGCCATAC
CATGTCACCAAGTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50551.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis