Browse Element(s) Details


Os.49345.1.S1_at

Description gb:AK109241.1
DB_XREF= gi:32994450
TID=Os.49345.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-156-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G02, full insert sequence.
FL= gb:AK109241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4941010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49340NANA5+28221357..28221863hypothetical protein
LOC_Os05g49350Os.47971.1.A1_at11/115+28223817..28224783expressed protein
LOC_Os05g49360NANA5+28226592..28227075hypothetical protein
LOC_Os05g49370Os.50975.1.S1_at11/115+28227633..28228661expressed protein
LOC_Os05g49380Os.17122.1.S1_at11/115+28231795..28235367Protease Do-like 1, chloroplast precursor, putative, expressed
LOC_Os05g49390OsAffx.27381.1.S1_at11/115+28236893..28242625hypothetical protein
LOC_Os05g49400OsAffx.15164.1.S1_at11/115+28244147..28245511F-box domain containing protein
LOC_Os05g49410Os.49345.1.S1_at10/115+28246150..28247425expressed protein
LOC_Os05g49420Os.19553.1.S1_at11/115+28251474..28256334G-box binding factor 1, putative, expressed
LOC_Os05g49430Os.33445.1.A1_at11/115+28259281..28261831Possible apospory-associated protein C, putative, expressed
LOC_Os05g49440Os.2250.1.S1_a_at11/115+28263471..28264618secreted protein, putative, expressed
LOC_Os05g49450OsAffx.15165.1.S1_at11/115+28265893..28267203F-box domain containing protein
LOC_Os05g49460OsAffx.15166.2.S1_at11/115+28268587..28273535CTP synthase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49345.1.S1_at--169--2751Chr05:28246381..28246405 (25 bp)
AAGAAGAAGCCGCTGTACACGCACA
LOC_Os05g49410
Os.49345.1.S1_at--354--3851NONE
CTGACCTCCACATCAGGTACTTGAA
NONE
Os.49345.1.S1_at--770--2771Chr05:28247012..28247036 (25 bp)
AAGAGCGGCCCTGGGAATCTTGACA
LOC_Os05g49410
Os.49345.1.S1_at--191--8051Chr05:28247049..28247073 (25 bp)
GGAGATTCAGCTATGCCCTTAGCAG
LOC_Os05g49410
Os.49345.1.S1_at--3--5971Chr05:28247084..28247108 (25 bp)
GAGAACGCAATACTTGGAGGACCTT
LOC_Os05g49410
Os.49345.1.S1_at--702--6171Chr05:28247100..28247124 (25 bp)
GAGGACCTTAATCTCATCAGGCCAT
LOC_Os05g49410
Os.49345.1.S1_at--908--10531Chr05:28247145..28247169 (25 bp)
TTCTTGCAGGATCTTAGCTTATGGG
LOC_Os05g49410
Os.49345.1.S1_at--549--1631Chr05:28247171..28247195 (25 bp)
AGCGCAGTAGGTGCATGCTCTTTCA
LOC_Os05g49410
Os.49345.1.S1_at--641--9791Chr05:28247204..28247228 (25 bp)
TAAGAAAAGCTCTGCCCTGCTGCTG
LOC_Os05g49410
Os.49345.1.S1_at--934--8591Chr05:28247231..28247255 (25 bp)
TGGTCGTTCGACGTCCATCAGGAAG
LOC_Os05g49410
Os.49345.1.S1_at--397--5891Chr05:28247256..28247280 (25 bp)
GAGCTTTGCTTAAGTTCCCTTCAGT
LOC_Os05g49410
Target Sequence 
AAGAAGAAGCCGCTGTACACGCACAGCCTGCCGTGCATCGAGGCGTGGCTGCGCAGCATCGGGTTCTCCCAGACCCGCGA
GGACCGCGCCGTCTGGGTCGCCGAGATGCCCCTCTGGCACGCCCGCCTCAGCCTCGACGTCACTGACCTCCACATCAGGT
ACTTGAAGAGCGGCCCTGGGAATCTTGACAAGGACGTAGAGAGGAGATTCAGCTATGCCCTTAGCAGAGAAGACATCGAG
AACGCAATACTTGGAGGACCTTAATCTCATCAGGCCATCAGAGGCTCAAGATTAGAAGTTCTTGCAGGATCTTAGCTTAT
GGGCAGCGCAGTAGGTGCATGCTCTTTCATGAGTGACTAAGAAAAGCTCTGCCCTGCTGCTGATTGGTCGTTCGACGTCC
ATCAGGAAGGAGCTTTGCTTAAGTTCCCTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis