Browse Element(s) Details


Os.49351.2.S1_x_at

Description gb:AK071696.1
DB_XREF= gi:32981719
TID=Os.49351.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033007C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109P16, full insert sequence.
FL= gb:AK071696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g250903/11hypothetical protein
LOC_Os12g082401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25060OsAffx.19001.1.S1_at10/1111+13784878..13790594oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os11g25070Os.40360.1.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25070Os.17546.2.S1_x_at1/1111+13791352..13795078retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25080OsAffx.28061.1.S1_at4/1111+13799585..13799992hypothetical protein
LOC_Os11g25090Os.49351.2.S1_x_at3/1111+13801693..13802205hypothetical protein
LOC_Os11g25100Os.49351.1.S1_at10/1111+13802839..13803422Tropinone reductase homolog At1g07440, putative
LOC_Os11g25110OsAffx.31124.1.S1_at11/1111+13807909..13809148hypothetical protein
LOC_Os11g25110Os.34727.1.S1_at1/1111+13807909..13809148hypothetical protein
LOC_Os11g25120NANA11+13809535..13811135transposon protein, putative, Mutator sub-class
LOC_Os11g25130OsAffx.19002.1.S1_at11/1111+13812581..13813549expressed protein
LOC_Os11g25140OsAffx.19003.1.S1_at7/1111+13815714..13816764hypothetical protein
LOC_Os11g25140OsAffx.1198.1.S1_at4/1111+13815714..13816764hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49351.2.S1_x_at--911--5571Chr11:13801868..13801892 (25 bp)
GAAAGGTCACATTGATGGATTCCAA
LOC_Os11g25090
Os.49351.2.S1_x_at--921--2731Chr11:13802030..13802054 (25 bp)
AAGAACCAGTCCTGCATGATGCCAT
LOC_Os11g25090
Os.49351.2.S1_x_at--246--5432Chr11:13802076..13802100 (25 bp)
GAACCAAGAGCTACTGCAACCGGCA
LOC_Os11g25090
Os.49351.2.S1_x_at--346--6471Chr11:13802201..13802225 (25 bp)
GATAAACTATCCCTCTAGGAGTTGA
NONE
Os.49351.2.S1_x_at--1036--8992Chr11:13802223..13802492 (25 bp)
TGAAGTCATTGACATTACCTCTGCA
NONE
Os.49351.2.S1_x_at--77--5691Chr11:13802478..13802502 (25 bp)
GACATTACCTCTGCATATTGGCTTA
NONE
Os.49351.2.S1_x_at--674--4951Chr11:13802504..13802528 (25 bp)
GCATATCTCTGCACATTGGCTGAAG
NONE
Os.49351.2.S1_x_at--553--8992Chr11:13802658..13802682 (25 bp)
TGAAGCAGATCCTCTTTCTTATGAT
NONE
Os.49351.2.S1_x_at--924--6412Chr11:13802680..13802704 (25 bp)
GATCTATTTCCTATTTACCTATTCT
NONE
Os.49351.2.S1_x_at--1064--211Chr11:13802747..13802771 (25 bp)
ATATTGAACATAACGTGCCTTGCAC
NONE
Os.49351.2.S1_x_at--912--7031Chr11:13802792..13802816 (25 bp)
GTACAACATGAACGGTTTCCTTTAT
NONE
Target Sequence 
GAAAGGTCACATTGATGGATTCCAAAGGTGAGAAACTCCATGTTCAAAGAACCAGTCCTGCATGATGCCATTAAGATTGG
TGTGAACTTTAGGAACCAAGAGCTACTGCAACCGGCAGAACAAAATAATGCTCCAAGAAAACCAGAAGTGGTGATAGTTG
AAGATAATGAAGTGGTGATTGAGCCATTGCCAAAAAAGAAGTGCACTGGCAACAAGGGATAAACTATCCCTCTAGGAGTT
GAAGTCATTGACATTACCTCTGCATATTGGCTTATGCATATCTCTGCACATTGGCTGAAGATCATATTTATTTTTTAGCA
AATTCTTGTATCTAATATGAAAATCAGAATGCATATATGCATGCACTTTATGAAAATTGTGCAGATTGTGCATAAGTCAG
CGGGGAATCGTTAGAGCTTCAAGTGTGATTGAAGCAGATCCTCTTTCTTATGATCTATTTCCTATTTACCTATTCTTCTT
TCAGATTATTAGGTTATAATATATTGGGTTTAATTTATATATTGAACATAACGTGCCTTGCACGTGTATGATTACTAGTA
TTAGTACAACATGAACGGTTTCCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49351.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis