Browse Element(s) Details


Os.49356.1.S1_at

Description gb:AK107574.1
DB_XREF= gi:32992783
TID=Os.49356.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49356 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-130-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-D06, full insert sequence.
FL= gb:AK107574.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0857011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08540Os.45977.1.S1_at5/118+4915242..4918859retrotransposon protein, putative, unclassified
LOC_Os08g08540Os.55127.1.S1_at1/118+4915242..4918859retrotransposon protein, putative, unclassified
LOC_Os08g08550NANA8+4924803..4931425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08560OsAffx.5751.1.S1_at11/118+4934198..4937093hypothetical protein
LOC_Os08g08570Os.49356.1.S1_at11/118+4940928..4945862expressed protein
LOC_Os08g08580NANA8+4952123..4956032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08586Os.27295.1.S1_at11/118+4960071..4962787expressed protein
LOC_Os08g08586Os.10085.1.S1_at1/118+4960071..4962787expressed protein
LOC_Os08g08592Os.27362.1.S1_at11/118+4964702..4967482expressed protein
LOC_Os08g08592Os.27362.1.S2_at11/118+4964702..4967482expressed protein
LOC_Os08g08592OsAffx.29424.1.S1_at7/118+4964702..4967482expressed protein
LOC_Os08g08600OsAffx.5752.1.S1_x_at11/118+4969829..4972830hypothetical protein
LOC_Os08g08600OsAffx.5752.1.S1_at10/118+4969829..4972830hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49356.1.S1_at--426--8191Chr08:4943359..4943383 (25 bp)
GGAAGATAGCGCAGGTCGTATCAAA
LOC_Os08g08570
Os.49356.1.S1_at--730--711Chr08:4943386..4943410 (25 bp)
ATGATGAGTTCCGTGTGGCTGCGAC
LOC_Os08g08570
Os.49356.1.S1_at--406--7471Chr08:4943398..4943422 (25 bp)
GTGTGGCTGCGACAAAAACTCATTA
LOC_Os08g08570
Os.49356.1.S1_at--409--2391Chr08:4943413..4943437 (25 bp)
AAACTCATTACGACTTTCAACAGAA
LOC_Os08g08570
Os.49356.1.S1_at--198--1271Chr08:4943437..4943461 (25 bp)
AGATCAGTGACCTCTTTCTGGAGTA
LOC_Os08g08570
Os.49356.1.S1_at--572--6611Chr08:4943480..4943504 (25 bp)
GTTGGCTAAGAGTCACCTGCAGTTT
LOC_Os08g08570
Os.49356.1.S1_at--893--6131Chr08:4945570..4945594 (25 bp)
GAGGGACAGCTGAACCTGTAACATT
LOC_Os08g08570
Os.49356.1.S1_at--687--2911Chr08:4945633..4945657 (25 bp)
AAGGATGGACCTGAGTGTGCTTCTT
LOC_Os08g08570
Os.49356.1.S1_at--424--8271Chr08:4945711..4945735 (25 bp)
GGCAGTTATGTGACCTAGACTCTAT
LOC_Os08g08570
Os.49356.1.S1_at--1121--10011Chr08:4945726..4945750 (25 bp)
TAGACTCTATTCCAGCTCACGTATG
LOC_Os08g08570
Os.49356.1.S1_at--720--3391Chr08:4945738..4945762 (25 bp)
CAGCTCACGTATGTGCTCTGTGGTT
LOC_Os08g08570
Target Sequence 
GGAAGATAGCGCAGGTCGTATCAAAAAATGATGAGTTCCGTGTGGCTGCGACAAAAACTCATTACGACTTTCAACAGAAG
ATCAGTGACCTCTTTCTGGAGTATCAAAGGGAGTTAAACATGTTGGCTAAGAGTCACCTGCAGTTTCAGAGAGACATGAT
GAAGCTGGAGCATTCCATATTCCTTCTTCCCAATTTTNCTCCAGAAGAAAAGGGACCTGTGGGTGCTGTGGGAGGTGACA
GGGGACCTGTGGATGCTGTGGGAGGTGACAGGGAACCAGTGGGTGCTGTGGGGGGTGACAAGGGATCTGAGGGACAGCTG
AACCTGTAACATTCAAAAGCTGATTTTGGTGGAGGGGACTTCAACTGATGCAAGGATGGACCTGAGTGTGCTTCTTCAAC
TGAAGCAAGGGATGACCTGAGTGTNTTTTTTNNNCTGCTTAAAAAATTAGGCAGTTATGTGACCTAGACTCTATTCCAGC
TCACGTATGTGCTCTGTGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis