Browse Element(s) Details


OsAffx.5751.1.S1_at

Description tigr:9636.m00808
TID=OsAffx.5751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0856011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g08530Os.40855.5.S1_x_at1/118+4908869..4910031hypothetical protein
LOC_Os08g08530Os.40360.1.S1_x_at1/118+4908869..4910031hypothetical protein
LOC_Os08g08540Os.45977.1.S1_at5/118+4915242..4918859retrotransposon protein, putative, unclassified
LOC_Os08g08540Os.55127.1.S1_at1/118+4915242..4918859retrotransposon protein, putative, unclassified
LOC_Os08g08550NANA8+4924803..4931425retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08560OsAffx.5751.1.S1_at11/118+4934198..4937093hypothetical protein
LOC_Os08g08570Os.49356.1.S1_at11/118+4940928..4945862expressed protein
LOC_Os08g08580NANA8+4952123..4956032retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g08586Os.27295.1.S1_at11/118+4960071..4962787expressed protein
LOC_Os08g08586Os.10085.1.S1_at1/118+4960071..4962787expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5751.1.S1_at--264--6331Chr08:4934853..4935336 (25 bp)
GATGCAGCGCCAAGTAGATTCCTCT
LOC_Os08g08560
OsAffx.5751.1.S1_at--423--6651Chr08:4934816..4934840 (25 bp)
GTTGATCTATCGCATTCCTTTGTCT
LOC_Os08g08560
OsAffx.5751.1.S1_at--231--7151Chr08:4934795..4934819 (25 bp)
GTCTCCCGTAGTTATGTAGATCCCG
LOC_Os08g08560
OsAffx.5751.1.S1_at--596--5751Chr08:4934699..4934723 (25 bp)
GACGGTGGATTGGATGCGACTTTCT
LOC_Os08g08560
OsAffx.5751.1.S1_at--1112--4091Chr08:4934658..4934682 (25 bp)
CGAAGTCGGACTCCCACGTGAGAAT
LOC_Os08g08560
OsAffx.5751.1.S1_at--70--5271Chr08:4934552..4934661 (25 bp)
GAATCCGGATCTTGACAGTGTCATC
LOC_Os08g08560
OsAffx.5751.1.S1_at--517--2571Chr08:4934475..4934499 (25 bp)
AACTGGAGCGATCACTCGTGGTTGT
LOC_Os08g08560
OsAffx.5751.1.S1_at--931--1131Chr08:4934377..4934401 (25 bp)
AGTGCCATGGCTGATATCTGCTGTC
LOC_Os08g08560
OsAffx.5751.1.S1_at--218--9651Chr08:4934354..4934378 (25 bp)
TCAGTTGAAGGTTGACCGCCCGGAG
LOC_Os08g08560
OsAffx.5751.1.S1_at--246--1171Chr08:4934320..4934344 (25 bp)
AGTACGACGGGCTACTTGCCTTGGA
LOC_Os08g08560
OsAffx.5751.1.S1_at--470--6891Chr08:4934268..4934292 (25 bp)
GTATAGGACAGCGTATCGACATCAG
LOC_Os08g08560
Target Sequence 
GATGCAGCGCCAAGTAGATTCCTCTTACGAGTCATTTGTTGATCTATCGCATTCCTTTGTCTCCCGTAGTTATGTAGATC
CCGAGAACGTCCAGCAAGGCGGAGATCCTGATGTCGAGATGGTCGAGTTGCCTTCCCCGAGCGATGCCGTCAAGGACGGT
GGATTGGATGCGACTTTCTGCCCGCCTGAGGCTGGCGAAGTCGGACTCCCACGTGAGAATCCGGATCTTGACAGTGTCAT
CGCTGAACGGGATAGGCGTATCGACTACTGGAGGATGAAGTTTGAAATCACCGAACTGGAGCGATCACTCGTGGTTGTGA
AGAAGGACCAAGCCATGGAGGCCCTCCGAGGTCGCGAGGTCTGGGTGAACTCGTATCTCAAGAGCTGCTGCAGTGCCATG
GCTGATATCTGCTGTCAGTTGAAGGTTGACCGCCCGGAGCCCGAGGAGAGTACGACGGGCTACTTGCCTTGGATGAGGGG
GGCGTGTGCTCAGCTCGAGGGTATAGGACAGCGTATCGACATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis