Browse Element(s) Details


Os.49361.1.S1_at

Description gb:AK120566.1
DB_XREF= gi:37990189
TID=Os.49361.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49361 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013133N09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013133N09, full insert sequence.
FL= gb:AK120566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1144011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g2899010/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11410Os.14184.1.S1_at11/116+6018598..6020854Cyclin, C-terminal domain containing protein, expressed
LOC_Os06g11420OsAffx.15370.1.S1_at11/116+6026824..6028446SKIP/SNW domain containing protein
LOC_Os06g11430Os.16961.1.S1_at11/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11430OsAffx.27566.1.S1_at4/116+6031432..6034427GRAM domain-containing protein, putative, expressed
LOC_Os06g11440Os.7473.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11440Os.49361.1.S1_at11/116+6035702..6049763transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g11450Os.55651.1.S1_at11/116+6057842..6059542Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g11460NANA6+6065748..6070866retrotransposon protein, putative, unclassified
LOC_Os06g11470NANA6+6073936..6074916hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49361.1.S1_at--472--3293Chr08:4944755..4944779 (25 bp)
CACAAACAAGCAGTCCTGGACCAAT
NONE
Os.49361.1.S1_at--251--7093Chr08:4944619..4944643 (25 bp)
GTCAAAGCTCCGTTGAAGTAGCACT
NONE
Os.49361.1.S1_at--146--8993Chr08:4944606..4944630 (25 bp)
TGAAGTAGCACTTGTACCCGTGCAG
NONE
Os.49361.1.S1_at--875--10393Chr08:4944454..4944478 (25 bp)
TTTTGCTATGTATGGCTGAAATGCG
NONE
Os.49361.1.S1_at--1128--6913Chr08:4944445..4944469 (25 bp)
GTATGGCTGAAATGCGTCAATCTGC
NONE
Os.49361.1.S1_at--606--613Chr08:4944434..4944458 (25 bp)
ATGCGTCAATCTGCAAGTATTTTGC
NONE
Os.49361.1.S1_at--2--6892Chr08:4944345..4944369 (25 bp)
GTATTTTTGCTTTTGTAATGATGTA
NONE
Os.49361.1.S1_at--1110--8973Chr08:4944308..4944332 (25 bp)
TGAACCTGTTATATGGCACCCTAAA
NONE
Os.49361.1.S1_at--83--1713Chr08:4944223..4944247 (25 bp)
ACCAATGTATGGTCTGATGGACCTG
NONE
Os.49361.1.S1_at--357--3873Chr08:4944210..4944234 (25 bp)
CTGATGGACCTGTTATGCATGGCCT
NONE
Os.49361.1.S1_at--1030--3993Chr08:4944112..4944135 (24 bp)
CGTGATGAATTAAGGCACTTCTGCC
NONE
Target Sequence 
CACAAACAAGCAGTCCTGGACCAATCANTAGGAGGAGGCTGGCATTAGAGGTNGGTCAAAGCTCCGTTGAAGTAGCACTT
GTACCCGTGCAGGTGCAAGCNGCAGTACAGCCAACCAAGAAANTCACACCAAGGAAAAAANCTAGCTAGCAAGCCAAAAA
GNNCATCANCACCAAAGCTTCTGAAANAAAATGTGTCAATCTGCNATCAATCTNCAAGTATTTTGCTATGTATGGCTGAA
ATGCGTCAATCTGCAAGTATTTTGCTATTTATGTCTGAAATCNTCAATCTNNAAGTAATNTGAACTTCTAATGTGCATNG
CCNTGATGATGTATTTTTGCTTTTGTAATGATGTATGNNNNCCATGATGAACCTGTTATATGGCACCCTAAACCNTGTTA
TATATAGACCATTGTATGGTCTGATGGCCCNTGATGGACCNTGTTATATNTATAGACCAATGTATGGTCTGATGGACCTG
TTATGCATGGCCTNCTTTTNGTAATNATGTGTGGCCTNCAATGAACNTATGAATTGNTNTGGNTTGATGAATTAAGATAT
TTGGATGGGACGTGATGAATTAAGGCACTTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49361.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis