Browse Element(s) Details


Os.49402.1.S1_at

Description gb:AK110835.1
DB_XREF= gi:32996044
TID=Os.49402.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-A11, full insert sequence.
FL= gb:AK110835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1763010/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17590NANA10+8551353..8553053retrotransposon, putative, centromere-specific
LOC_Os10g17600OsAffx.6683.1.S1_at11/1110+8560702..8562492hypothetical protein
LOC_Os10g17610Os.45212.1.S1_x_at10/1110+8564391..8570345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17620OsAffx.25156.1.S1_x_at11/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.4.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17620OsAffx.25156.5.S1_x_at3/1110+8571616..8574308hypothetical protein
LOC_Os10g17630Os.49402.1.S1_at10/1110+8576763..8579068B3 DNA binding domain containing protein, expressed
LOC_Os10g17640OsAffx.6684.1.S1_at11/1110+8585708..8585996hypothetical protein
LOC_Os10g17650Os.46489.1.S1_at11/1110+8588927..8594834Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g17660Os.12777.1.S1_a_at11/1110+8596569..8597679Profilin A, putative, expressed
LOC_Os10g17670OsAffx.8300.1.S1_at11/1110+8603911..8605502hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49402.1.S1_at--390--931Chr10:8578655..8578679 (25 bp)
AGGCACATGAAAACCCTTGCATAGT
LOC_Os10g17630
Os.49402.1.S1_at--818--4951Chr10:8578673..8578697 (25 bp)
GCATAGTGCATCGAACATCCAAGTA
LOC_Os10g17630
Os.49402.1.S1_at--359--7851Chr10:8578833..8578857 (25 bp)
GGTACCCTATAGACCATCTGGAGCA
LOC_Os10g17630
Os.49402.1.S1_at--321--8551Chr10:8578851..8578875 (25 bp)
TGGAGCAGCTCATGACTGGCAGAAC
LOC_Os10g17630
Os.49402.1.S1_at--168--1131Chr10:8578888..8578912 (25 bp)
AGTGCAGACATTAGTAGGCCCTTCA
LOC_Os10g17630
Os.49402.1.S1_at--233--871Chr10:8578903..8578927 (25 bp)
AGGCCCTTCAGTGAACATGGTTCTT
LOC_Os10g17630
Os.49402.1.S1_at--960--7891Chr10:8578921..8578945 (25 bp)
GGTTCTTCACACATCAACAGACCAT
LOC_Os10g17630
Os.49402.1.S1_at--114--2431Chr10:8578960..8578984 (25 bp)
AAAAGGATGGACAGATTTCGCCCTC
LOC_Os10g17630
Os.49402.1.S1_at--308--5511Chr10:8579002..8579026 (25 bp)
GAACACAGTGTGCATTTTCCATTTT
LOC_Os10g17630
Os.49402.1.S1_at--633--2611Chr10:8579035..8579059 (25 bp)
AACCCATCTAGGAGTGATTGTCGAT
LOC_Os10g17630
Os.49402.1.S1_at--95--10611Chr10:8579100..8579124 (25 bp)
TTGTTAATAGCAAGCGTCCCTACCT
NONE
Target Sequence 
AGGCACATGAAAACCCTTGCATAGTGCATCGAACATCCAAGTAAACTCTATGTTGTCACTATGAATGAAACGTTCATGAA
ACAAGACAGAGTGTACTTTTCAAAAAGGTACCCTATAGACCATCTGGAGCAGCTCATGACTGGCAGAACAGAAGATATTG
AAGTGCAGACATTAGTAGGCCCTTCAGTGAACATGGTTCTTCACACATCAACAGACCATCGTTGCAACCTAAAAAAAGGA
TGGACAGATTTCGCCCTCAGCAATGGCATCAAGTTGAACACAGTGTGCATTTTCCATTTTTACAAGACAACCCATCTAGG
AGTGATTGTCGATATCTTCTGAAGATACCCTAATGCTATCTGATATCATGCTTTTGTTAATAGCAAGCGTCCCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis