Browse Element(s) Details


Os.49406.1.S1_at

Description gb:AK070515.1
DB_XREF= gi:32980539
TID=Os.49406.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49406 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055G08, full insert sequence.
FL= gb:AK070515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2951011/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g29490OsAffx.12276.1.S1_at11/112+17513503..17513760hypothetical protein
LOC_Os02g29500Os.49856.1.S1_at11/112+17514577..17515783expressed protein
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29520OsAffx.2793.1.S1_at11/112+17535907..17536320hypothetical protein
LOC_Os02g29530Os.7819.1.S1_at11/112+17553350..17556934Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os02g29540OsAffx.2794.1.S1_at11/112+17558469..17558870hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49406.1.S1_at--930--3591Chr02:17531354..17531378 (25 bp)
CATTGCCTTGAAGCTGTCATTTGGT
LOC_Os02g29510
Os.49406.1.S1_at--412--10331Chr02:17532093..17532117 (25 bp)
TTTAATACAGCTGTGGTCTCTCCTG
LOC_Os02g29510
Os.49406.1.S1_at--195--7171Chr02:17532108..17532132 (25 bp)
GTCTCTCCTGTGTACTACGTGATGT
LOC_Os02g29510
Os.49406.1.S1_at--20--7891Chr02:17533229..17533253 (25 bp)
GGTTTTGTGACCATCGTTGCAGGAA
LOC_Os02g29510
Os.49406.1.S1_at--66--5451Chr02:17533289..17533313 (25 bp)
GAACCGCCGCTACCAGATGATGAAA
LOC_Os02g29510
Os.49406.1.S1_at--106--5331Chr02:17533329..17533353 (25 bp)
GAAGTGTGCGCCCAGATCGTCTGTC
LOC_Os02g29510
Os.49406.1.S1_at--1063--4011Chr02:17533346..17533370 (25 bp)
CGTCTGTCACAGTCTAGTAGCTAGC
LOC_Os02g29510
Os.49406.1.S1_at--987--5511Chr02:17533381..17533405 (25 bp)
GAAAACTTTTGGCTTATCGATGTAA
LOC_Os02g29510
Os.49406.1.S1_at--598--2851Chr02:17533442..17533466 (25 bp)
AAGTCCTACACCGATTGATACGCAG
LOC_Os02g29510
Os.49406.1.S1_at--256--6491Chr02:17533458..17533482 (25 bp)
GATACGCAGACAGGCACAATCTTGT
LOC_Os02g29510
Os.49406.1.S1_at--886--5531Chr02:17533549..17533573 (25 bp)
GAAACTCGGCATTAGGCGTTTCCGC
LOC_Os02g29510
Target Sequence 
CATTGCCTTGAAGCTGTCATTTGGTGGATCANATCAGTTCATCTACATCCAAACATGNTTCTTCATAGTAGNTGTTATAG
TTTGTTGTTTGGTGCAGTTGAACTACTTAAATAAGGCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTAC
GTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGGATTCATTCTCACGGAATGCAACACAGATTGC
AACACAGTTATGTGGTTTTGTGACCATCGTTGCAGGAACTTTTCTCCTGCACAAGACTAGGGATATGGGGAATGAACCGC
CGCTACCAGATGATGAAATTTGTCTCGATGGAGGAAGTGTGCGCCCAGATCGTCTGTCACAGTCTAGTAGCTAGCATGTA
GTACCGAAAACTTTTGGCTTATCGATGTAAAAAATGCTAGTGGATGCTGAATAAACTTGACTTGAAAAGTCCTACACCGA
TTGATACGCAGACAGGCACAATCTTGTGCTGTTTGGCAATCTTGTTCAGAACTTTGTTTTCTCGTAGAATTTGAAAATTT
TAGGGACTATGATGAAACTCGGCATTAGGCGTTTCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49406.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis