Browse Element(s) Details


Os.49856.1.S1_at

Description gb:AK112058.1
DB_XREF= gi:37988721
TID=Os.49856.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49856 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G08, full insert sequence.
FL= gb:AK112058.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2950011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g29490OsAffx.12276.1.S1_at11/112+17513503..17513760hypothetical protein
LOC_Os02g29500Os.49856.1.S1_at11/112+17514577..17515783expressed protein
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29520OsAffx.2793.1.S1_at11/112+17535907..17536320hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49856.1.S1_at--739--3491Chr02:17515119..17515143 (25 bp)
CATGGCCCATCGTACTTGGCTTTGC
LOC_Os02g29500
Os.49856.1.S1_at--517--10871Chr02:17515104..17515128 (25 bp)
TTGGCTTTGCCACCTTTCGGTGTGA
LOC_Os02g29500
Os.49856.1.S1_at--958--10611Chr02:17515089..17515113 (25 bp)
TTCGGTGTGATCTTGGCGTTGCCCT
LOC_Os02g29500
Os.49856.1.S1_at--327--4031Chr02:17515073..17515097 (25 bp)
CGTTGCCCTTCTCAGTGAACTTGGT
LOC_Os02g29500
Os.49856.1.S1_at--455--5491Chr02:17515057..17515081 (25 bp)
GAACTTGGTTCTGTGGTTGCATGTA
LOC_Os02g29500
Os.49856.1.S1_at--531--4791Chr02:17514973..17514997 (25 bp)
GCTCCAGGGCATTTGATGGCTGTGA
LOC_Os02g29500
Os.49856.1.S1_at--760--10851Chr02:17514944..17514968 (25 bp)
TTGGTGCAAGACTCTGTGTTGTGCC
LOC_Os02g29500
Os.49856.1.S1_at--155--4271Chr02:17514899..17514923 (25 bp)
CCTGTTGTGGCTTGTGGGCAATTTA
LOC_Os02g29500
Os.49856.1.S1_at--765--5491Chr02:17514872..17514896 (25 bp)
GAACATGTTCTGTGCATGCTGCTGT
LOC_Os02g29500
Os.49856.1.S1_at--46--631Chr02:17514857..17514881 (25 bp)
ATGCTGCTGTTCTGAGGGAGGCAAA
LOC_Os02g29500
Os.49856.1.S1_at--75--3271Chr02:17514836..17514860 (25 bp)
CAAAATAGACTTCTGGTGGTTGGCT
LOC_Os02g29500
Target Sequence 
CATGGCCCATCGTACTTGGCTTTGCCACCTTTCGGTGTGATCTTGGCGTTGCCCTTCTCAGTGAACTTGGTTCTGTGGTT
GCATGTATTTGGTGGAGGGTTTTGTGGATTGGGTTCATGGTGAATGTATTGCTGCTGTTGGGGAGGGCTCCAGGGCATTT
GATGGCTGTGAATGTTTGGTGCAAGACTCTGTGTTGTGCCGGCAAAAGTGGGTGTGANACCCTGTTGTGGCTTGTGGGCA
ATTTATCGAACATGTTCTGTGCATGCTGCTGTTCTGAGGGAGGCAAAATAGACTTCTGGTGGTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49856.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis