Browse Element(s) Details


OsAffx.12276.1.S1_at

Description tigr:9630.m02816
TID=OsAffx.12276.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2949011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29464Os.54878.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.7297.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464Os.32034.1.A1_s_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29464OsAffx.12275.1.S1_x_at11/112+17484105..17501909DNA repair protein RAD50, putative, expressed
LOC_Os02g29480Os.8040.1.S1_a_at11/112+17504445..17509854Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g29490OsAffx.12276.1.S1_at11/112+17513503..17513760hypothetical protein
LOC_Os02g29500Os.49856.1.S1_at11/112+17514577..17515783expressed protein
LOC_Os02g29510Os.49406.1.S1_at11/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29510OsAffx.20275.1.S1_at1/112+17521680..17533575Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os02g29520OsAffx.2793.1.S1_at11/112+17535907..17536320hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12276.1.S1_at--186--7631Chr02:17513537..17513561 (25 bp)
GGGACACAACCGACACAGAGGTGGA
LOC_Os02g29490
OsAffx.12276.1.S1_at--533--931Chr02:17513572..17513596 (25 bp)
AGGAACCGCGGTGGGCTCCGAGCGT
LOC_Os02g29490
OsAffx.12276.1.S1_at--287--8491Chr02:17513596..17513620 (25 bp)
TGGCTCGCGAGGTTGGTTCCACACT
LOC_Os02g29490
OsAffx.12276.1.S1_at--284--4051Chr02:17513603..17513627 (25 bp)
CGAGGTTGGTTCCACACTTGTGCGC
LOC_Os02g29490
OsAffx.12276.1.S1_at--971--10851Chr02:17513608..17513632 (25 bp)
TTGGTTCCACACTTGTGCGCCTGGT
LOC_Os02g29490
OsAffx.12276.1.S1_at--224--10831Chr02:17513620..17513644 (25 bp)
TTGTGCGCCTGGTCGCTCACTGCCA
LOC_Os02g29490
OsAffx.12276.1.S1_at--376--3311Chr02:17513660..17513684 (25 bp)
CACACTCTCTCGTCGGGCGATTTAA
LOC_Os02g29490
OsAffx.12276.1.S1_at--439--3971Chr02:17513673..17513697 (25 bp)
CGGGCGATTTAAGGACCAGGTCACT
LOC_Os02g29490
OsAffx.12276.1.S1_at--64--8091Chr02:17513685..17513709 (25 bp)
GGACCAGGTCACTGTCAGTCGTGAA
LOC_Os02g29490
OsAffx.12276.1.S1_at--422--7831Chr02:17513691..17513715 (25 bp)
GGTCACTGTCAGTCGTGAAATTTAT
LOC_Os02g29490
OsAffx.12276.1.S1_at--248--8971Chr02:17513706..17513730 (25 bp)
TGAAATTTATGATGGCGTGCCACCC
LOC_Os02g29490
Target Sequence 
GGGACACAACCGACACAGAGGTGGAGGCGGCGAGGAGGAACCGCGGTGGGCTCCGAGCGTGGCTCGCGAGGTTGGTTCCA
CACTTGTGCGCCTGGTCGCTCACTGCCACTGCTCTCCCCACTGCACACTCTCTCGTCGGGCGATTTAAGGACCAGGTCAC
TGTCAGTCGTGAAATTTATGATGGCGTGCCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12276.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis