Browse Element(s) Details


Os.49426.1.S1_at

Description gb:AK102314.1
DB_XREF= gi:32987523
TID=Os.49426.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49426 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090F02, full insert sequence.
FL= gb:AK102314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3916011/11Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g187902/11Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed
LOC_Os08g39150Os.26955.1.S1_at7/118+24594105..24598380expressed protein
LOC_Os08g39160Os.49426.1.S1_at11/118+24598749..24601260Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os08g39170OsAffx.6080.1.S1_at11/118+24602067..24605518Protein kinase domain containing protein
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009152biological_processpurine ribonucleotide biosynthesis
GO:0008864molecular_functionformyltetrahydrofolate deformylase activity
GO:0016742molecular_functionhydroxymethyl-, formyl- and related transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49426.1.S1_at--22--3192Chr08:24616922..24616946 (25 bp)
AATTGGCTGCAAGAGTCCTTCATGA
NONE
Os.49426.1.S1_at--821--1012Chr08:24600701..24600725 (25 bp)
AGGTTTATGTTGAGGCAGTTGCTGC
LOC_Os08g39160
Os.49426.1.S1_at--578--5031Chr08:24600715..24600739 (25 bp)
GCAGTTGCTGCCCTATGTGATGACC
LOC_Os08g39160
Os.49426.1.S1_at--1031--4771Chr08:24600721..24600745 (25 bp)
GCTGCCCTATGTGATGACCGAATTG
LOC_Os08g39160
Os.49426.1.S1_at--404--3271Chr08:24600785..24600809 (25 bp)
CAAACCCTGACGAGTACACTTAACT
LOC_Os08g39160
Os.49426.1.S1_at--109--9032Chr08:24600842..24600866 (25 bp)
TGCACGTAATGAGGCTTCTAGAATG
LOC_Os08g39160
Os.49426.1.S1_at--931--8291Chr08:24600854..24600878 (25 bp)
GGCTTCTAGAATGCCTGCATTGTTT
LOC_Os08g39160
Os.49426.1.S1_at--695--5311Chr08:24600892..24600916 (25 bp)
GAAGGTCACTCGTACTAATTGAGAT
LOC_Os08g39160
Os.49426.1.S1_at--467--5531Chr08:24600942..24600966 (25 bp)
GAAACAAAATATCTTGTGCCGTTCA
LOC_Os08g39160
Os.49426.1.S1_at--1058--3611Chr08:24600975..24600999 (25 bp)
CTTGTTGTGTGACTTTGCTCCAACA
LOC_Os08g39160
Os.49426.1.S1_at--850--10071Chr08:24601012..24601036 (25 bp)
TAGGCCGATACTTAGAAACCTCAGT
LOC_Os08g39160
Target Sequence 
AATTGGCTGCAAGAGTCCTTCATGAGGAACATCAGGTTTATGTTGAGGCAGTTGCTGCCCTATGTGATGACCGAATTGTG
TGGAGAGAAGATGGTGTNCCACTTATTAGAAGNCANACAAACCCTGACGAGTACACTTAACTCATNGTACTACCTCAAGG
ATTNCTGCGCAGCNTGCACGTAATGAGGCTTCTAGAATGCCTGCATTGTTTTTTNNCNNNNGGCNTGAAGGTCACTCGTA
CTAATTGAGATAAATAACNTGTCTGGTGCTGNTACTGAAACAAAATATCTTGTGCCGTTCAANTCACNNCTTGTTGTGTG
ACTTTGCTCCAACANTGACATGNGCNATAGGCCGATACTTAGAAACCTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis