Browse Element(s) Details


Os.4943.1.S1_at

Description gb:AK101947.1
DB_XREF= gi:32987156
TID=Os.4943.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075D02, full insert sequence.
FL= gb:AK060657.1 gb:AK101947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4387011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43840Os.53419.1.S1_at11/112+26465764..26467753UPF0326 protein hag1, putative, expressed
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed
LOC_Os02g43912OsAffx.2952.1.S1_at11/112+26501953..26504208ceramide kinase, putative, expressed
LOC_Os02g43920Os.22624.2.S1_at11/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43920Os.46566.2.A1_at1/112+26505239..26509644Anaphase promoting complex subunit 8/cdc23 family protein, expressed
LOC_Os02g43930Os.12175.1.S1_at11/112+26513465..26517486DnaJ protein homolog 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4943.1.S1_at--21--651Chr02:26489177..26489201 (25 bp)
ATGCATTCAGCTCCGATCTTGTCAG
LOC_Os02g43870
Os.4943.1.S1_at--670--8991Chr02:26489120..26489144 (25 bp)
TGAATGCTTTCTTCGAGTTGGCAAC
LOC_Os02g43870
Os.4943.1.S1_at--409--4311Chr02:26489082..26489106 (25 bp)
CCTTCACCATCATTGAGACCTAACA
LOC_Os02g43870
Os.4943.1.S1_at--1068--6911Chr02:26489006..26489030 (25 bp)
GTAGTTTACCGGCTTGCTATTTAAT
LOC_Os02g43870
Os.4943.1.S1_at--788--9911Chr02:26488943..26488967 (25 bp)
TACTGAGGCATTTCAGCCTGGCCAA
LOC_Os02g43870
Os.4943.1.S1_at--719--2371Chr02:26488912..26488936 (25 bp)
AAACCTGCTGAATTTGTGCTGGCCA
LOC_Os02g43870
Os.4943.1.S1_at--157--4711Chr02:26488895..26488919 (25 bp)
GCTGGCCAGGGAACTGAATAGCCTT
LOC_Os02g43870
Os.4943.1.S1_at--748--5231Chr02:26488880..26488904 (25 bp)
GAATAGCCTTGACATGAACTCAGAG
LOC_Os02g43870
Os.4943.1.S1_at--868--7411Chr02:26488814..26488838 (25 bp)
GTGTTTTTCTTGTGCATTACCTGGA
LOC_Os02g43870
Os.4943.1.S1_at--327--10531Chr02:26488762..26488786 (25 bp)
TTCATAGGCCAGTGCCCCTGAAGAA
LOC_Os02g43870
Os.4943.1.S1_at--392--9771Chr02:26488696..26488720 (25 bp)
TAATGCATCGAAACACTCCATGTGA
LOC_Os02g43870
Target Sequence 
ATGCATTCAGCTCCGATCTTGTCAGGCAGAGCNNAGAAGTCAGGGAAGGAAAAGAATTTGAATGCTTTCTTCGAGTTGGC
AACNAGCTTGCTNGTAGCCCTTCACCATCATTGAGACCTAACACAAAGTTTATACTCAAAAAGCTCGAAGAGATTGCAAA
ATAAATTAAACTGGGTAGTTTACCGGCTTGCTATTTAATCGGCATTGCATTATAGCAGCATATACAGCAATGACGAGTAC
TGAGGCATTTCAGCCTGGCCAAGGCTAGAAACCTGCTGAATTTGTGCTGGCCAGGGAACTGAATAGCCTTGACATGAACT
CAGAGTAACATACATGCTGGAGGGGTGCTTCAGATGCAGGATCACTGTGTTTTTCTTGTGCATTACCTGGAACCGAGAAA
AAAAAATGTAGAACTGCTGTTCATAGGCCAGTGCCCCTGAAGAACTGTATAACACACTGTTAGTGAAATGTATATGTTGT
ACTTTTAATGCATCGAAACACTCCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis