Browse Element(s) Details


Os.49432.1.S1_at

Description gb:AK111492.1
DB_XREF= gi:37988155
TID=Os.49432.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49432 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B10, full insert sequence.
FL= gb:AK111492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3132011/11RING zinc finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31370OsAffx.25317.1.S1_at10/113+17827085..17828044hypothetical protein
LOC_Os03g31370OsAffx.26847.1.S1_x_at1/113+17827085..17828044hypothetical protein
LOC_Os03g31380OsAffx.13141.1.S1_at9/113+17832791..17835173hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49432.1.S1_at--284--1011Chr03:17806167..17806191 (25 bp)
AGGTTATTCGAATCCCATCAGACGT
LOC_Os03g31320
Os.49432.1.S1_at--377--7711Chr03:17806087..17806111 (25 bp)
GGGTCCCCATCTTGAATGCAGAGAG
LOC_Os03g31320
Os.49432.1.S1_at--550--9871Chr03:17806060..17806084 (25 bp)
TACAGGCGTTGTTGCGCAAGTCGCT
LOC_Os03g31320
Os.49432.1.S1_at--1068--271Chr03:17805980..17806004 (25 bp)
ATAGTGCTCTATGCAATCCCTGCTA
LOC_Os03g31320
Os.49432.1.S1_at--194--10431Chr03:17805928..17805952 (25 bp)
TTATCACCGTGTTATTTGCTCTGCC
LOC_Os03g31320
Os.49432.1.S1_at--619--8851Chr03:17805895..17805919 (25 bp)
TGATCCTGTATTTTGCTTACCCTAG
LOC_Os03g31320
Os.49432.1.S1_at--1009--5571Chr03:17805810..17805834 (25 bp)
GAAATCTCCACGCTGTTGTTGGATC
LOC_Os03g31320
Os.49432.1.S1_at--1134--4811Chr03:17805760..17805784 (25 bp)
GCTCTTTCATGTCCTTGTACGTGTA
LOC_Os03g31320
Os.49432.1.S1_at--741--2991Chr03:17805735..17805759 (25 bp)
AATGTTCCAAGGACATGCGTGCCCT
LOC_Os03g31320
Os.49432.1.S1_at--212--1431Chr03:17805655..17805679 (25 bp)
AGAAAGCCAATGTCTGTCCTCTGTA
LOC_Os03g31320
Os.49432.1.S1_at--541--711Chr03:17805627..17805651 (25 bp)
ATGATCACTCATCTCCTAGTACAGC
LOC_Os03g31320
Target Sequence 
AGGTTATTCGAATCCCATCAGACGTCCACTCCCACCACCGGTTGAAACACAATCCCCCAGTGTGAACCATGCCAATCATG
GGGTCCCCATCTTGAATGCAGAGAGGGTACAGGCGTTGTTGCGCAAGTCGCTGTCCTTCTTGGTTCACCTGACTGCCAAG
TTTCCCCTGGTGTTCATTTTCCTCCTCATAGTGCTCTATGCAATCCCTGCTAGTGCAGCTGTCTTGTTATTATACATCCT
TATCACCGTGTTATTTGCTCTGCCCTCCTTCTTGATCCTGTATTTTGCTTACCCTAGCCTAGACTGGCTTGTTAGAGAAA
TCTTTGCTTGAGATTTCCTTTACAAAACACTGCTGGCGAAATCTCCACGCTGTTGTTGGATCTGTGTATCTGAACTGAAT
TCTTTCTGCTCTTTCATGTCCTTGTACGTGTAAATGTTCCAAGGACATGCGTGCCCTTGTTAGCTTTTTTTTCTTTTTCT
TTTGGTGTTACAGTTGTATATTTGGAAACAGTAGAAAGCCAATGTCTGTCCTCTGTAGACATGATCACTCATCTCCTAGT
ACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis