Browse Element(s) Details


Os.49462.1.S1_at

Description gb:AK073040.1
DB_XREF= gi:32983063
TID=Os.49462.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49462 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033000A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033000A12, full insert sequence.
FL= gb:AK073040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4464211/11YDA, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44600OsAffx.24724.1.S1_x_at11/112+27017431..27022547U-box domain containing protein, expressed
LOC_Os02g44610NANA2+27023315..27029874Protein kinase domain containing protein, expressed
LOC_Os02g44620OsAffx.12495.1.S1_at8/112+27032599..27034996hypothetical protein
LOC_Os02g44630Os.37752.1.S1_at10/112+27038450..27041579Aquaporin RWC3, putative, expressed
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49462.1.S1_at--979--8571Chr02:27044139..27044163 (25 bp)
TGGTCATTGATTTCACCCAAAGGTG
LOC_Os02g44642
Os.49462.1.S1_at--986--3851Chr02:27044076..27044100 (25 bp)
CTGAGCCAGTTTGCCCATCTATTTA
LOC_Os02g44642
Os.49462.1.S1_at--315--5171Chr02:27044049..27044073 (25 bp)
GCAAGCCTGGCACTGTATCATAGTA
LOC_Os02g44642
Os.49462.1.S1_at--988--2111Chr02:27043421..27043445 (25 bp)
ACAGGCGTTGACTTCCATATTACCA
LOC_Os02g44642
Os.49462.1.S1_at--155--2071Chr02:27043411..27043435 (25 bp)
ACTTCCATATTACCATGCCTGTTAT
LOC_Os02g44642
Os.49462.1.S1_at--86--6771Chr02:27043384..27043408 (25 bp)
GTTAACCAGTTACACGTCGTTGATG
LOC_Os02g44642
Os.49462.1.S1_at--151--6911Chr02:27043290..27043314 (25 bp)
GTATCTACATTCGTTTTCCTTTGGA
LOC_Os02g44642
Os.49462.1.S1_at--855--132Chr01:28727706..28727836 (24 bp)
ATTCAATACCCATTCTTTTTCTCAG
NONE
Os.49462.1.S1_at--218--9111Chr02:27043148..27043172 (25 bp)
TGCTGCGAGCTTTTGCAACTAGTCA
LOC_Os02g44642
Os.49462.1.S1_at--777--2531Chr02:27043132..27043156 (25 bp)
AACTAGTCAGCTGCAGCCTGCATAG
LOC_Os02g44642
Os.49462.1.S1_at--699--4731Chr02:27043094..27043118 (25 bp)
GCTGTACTCAGGTAATCCATTCACT
LOC_Os02g44642
Target Sequence 
TGGTCATTGATTTCACCCAAAGGTGTGCTGGATAGGCATTGAGTTGGAGCTTGATGAGAGCTGCTGAGCCAGTTTGCCCA
TCTATTTACTGCAAGCCTGGCACTGTATCATAGTACACGAATAATTTCATTAATTATTTCAGAAGCTGACCGTCTCAACA
AAGGTGAGCTATGCCCCCACCAGGAACAGGCGTTGACTTCCATATTACCATGCCTGTTATGTGTTAACCAGTTACACGTC
GTTGATGCAATTGTATATTACAGAGGGTCTAGATAGCCAAGGACCCAAAACAGTAGTTCTTCACCTGTATACTCTGGTAT
CTACATTCGTTTTCCTTTGGACAATCTATGGGTTTCGAGGCCATTGTACAGGAGGAAACTCAACTAGAAGTCCACATTTT
GCAAAGGTAGAGGCAATTGAACCATTCAATACCCATTCTTTTTCTCAGTACTTCCCCTTGCTGCGAGCTTTTGCAACTAG
TCAGCTGCAGCCTGCATAGTGAAAGCGTTGTTGCTGTACTCAGGTAATCCATTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis