Browse Element(s) Details


Os.49492.1.S1_at

Description gb:AK106279.1
DB_XREF= gi:32991488
TID=Os.49492.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49492 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-H11, full insert sequence.
FL= gb:AK106279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5091010/11chromosome-associated kinesin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed
LOC_Os02g50919NANA2+31131901..31132058NA
LOC_Os02g50930OsAffx.24820.1.S1_at11/112+31135212..31136527Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g50940Os.4657.1.S1_at11/112+31139411..31140268F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010215biological_processcellulose microfibril organization
GO:0005737cellular_componentcytoplasm
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49492.1.S1_at--89--1491Chr02:31115328..31115352 (25 bp)
AGAATTGGCGCAAGTCTACCGTTCA
LOC_Os02g50910
Os.49492.1.S1_at--900--4591Chr02:31115158..31115182 (25 bp)
GCGAAGCCTGACGAATCCATGAGCA
LOC_Os02g50910
Os.49492.1.S1_at--371--2591Chr02:31115122..31115146 (25 bp)
AACGTCACTGCCGTTCGTGCGAGAT
LOC_Os02g50910
Os.49492.1.S1_at--106--6051Chr02:31115102..31115126 (25 bp)
GAGATCTCCTGCTCGGCCGAGAAAG
LOC_Os02g50910
Os.49492.1.S1_at--242--1251Chr02:31115042..31115066 (25 bp)
AGTTGATCAATTGGCTCACTCGAGC
LOC_Os02g50910
Os.49492.1.S1_at--1001--7351Chr02:31115015..31115039 (25 bp)
GTGAAGCTGCAAGCATCCAACGGCT
LOC_Os02g50910
Os.49492.1.S1_at--1089--6671NONE
GTTGCGAGGCCTTTTGATGTTACTT
NONE
Os.49492.1.S1_at--759--7351Chr02:31114904..31114928 (25 bp)
GTGAACCTCTGGAGTTCCTGTGAAC
LOC_Os02g50910
Os.49492.1.S1_at--24--6331Chr02:31114867..31114891 (25 bp)
GATGCACCGTTGTTTCACTTTGTTG
LOC_Os02g50910
Os.49492.1.S1_at--450--4871Chr02:31114831..31114855 (25 bp)
GCTATGGCTGATCACTCAACGTTGA
LOC_Os02g50910
Os.49492.1.S1_at--812--6951Chr02:31114804..31114828 (25 bp)
GTAGACACTTTGTACAACTCTTGTT
LOC_Os02g50910
Target Sequence 
AGAATTGGCGCAAGTCTACCGTTCAGCTCGTCCCTTCAGCGCCACCTNTCCCACCCACGGCGCCGCANAACACCGAGCCG
GTTNCACGGAACAGAGACATACCCCTNAGGCTGCCCCGAGCAATGTCCTNACCAGCTGTGGACAGCATCCCTCTCACGGA
CCGCAACGCCGCGAAGCCTGACGAATCCATGAGCAGCAACAAGGAGAACGTCACTGCCGTTCGTGCGAGATCTCCTGCTC
GGCCGAGAAAGAACGCCAACGAGAAAGAGAATCACTTGCGATGATTAGTTGATCAATTGGCTCACTCGAGCCTGTGAAGC
TGCAAGCATCCAACGGCTTTGTTGCGAGGCCTTTTGATGTTACTTGGTGGTGGGGATGCTGCCTCGGTGTCCCTCGGCAT
GGCCGGCTGCGGAGGCAAATAGAAGTGAACCTCTGGAGTTCCTGTGAACTGACCCGCTCGTGATGCACCGTTGTTTCACT
TTGTTGTCTTTTGTTAAGCTATGGCTGATCACTCAACGTTGAATGTAGACACTTTGTACAACTCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis