Browse Element(s) Details


OsAffx.3031.1.S1_at

Description tigr:9630.m04990
TID=OsAffx.3031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5090011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein
LOC_Os02g50910Os.49492.1.S1_at10/112+31114780..31118150chromosome-associated kinesin, putative, expressed
LOC_Os02g50919NANA2+31131901..31132058NA

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3031.1.S1_at--137--4351Chr02:31107108..31107132 (25 bp)
CCAGGAGGCCAATGAGCACGAGATC
LOC_Os02g50900
OsAffx.3031.1.S1_at--857--5931Chr02:31107121..31107145 (25 bp)
GAGCACGAGATCAACCTGGTTACCT
LOC_Os02g50900
OsAffx.3031.1.S1_at--674--8571Chr02:31107137..31107161 (25 bp)
TGGTTACCTCATGGAACAACCCTGC
LOC_Os02g50900
OsAffx.3031.1.S1_at--405--10571Chr02:31107284..31107304 (21 bp)
TTCTCATCCAAGGACATGGGAAGCT
LOC_Os02g50900
OsAffx.3031.1.S1_at--211--811Chr02:31107295..31107319 (25 bp)
ATGGGAAGCTCAGTTCCAGTCCGGT
LOC_Os02g50900
OsAffx.3031.1.S1_at--775--6691Chr02:31107307..31107411 (25 bp)
GTTCCAGTCCGGTATCAAGACCATT
LOC_Os02g50900
OsAffx.3031.1.S1_at--347--9731Chr02:31107404..31107425 (22 bp)
TCAAGACCATTGCTCTGATCGCCGT
LOC_Os02g50900
OsAffx.3031.1.S1_at--697--6371Chr02:31107417..31107441 (25 bp)
GATCGCCGTCAGAGAAGGCGTTGTA
LOC_Os02g50900
OsAffx.3031.1.S1_at--889--8371Chr02:31107433..31107457 (25 bp)
GGCGTTGTACAGTTAGGCTCCATGA
LOC_Os02g50900
OsAffx.3031.1.S1_at--910--1291Chr02:31108244..31108268 (25 bp)
AGATGCACCACATCGTGCCGTCGAT
LOC_Os02g50900
OsAffx.3031.1.S1_at--382--9251Chr02:31108286..31108310 (25 bp)
TCCTCTCGAAGCTGCCGTCGGTCGG
LOC_Os02g50900
Target Sequence 
CCAGGAGGCCAATGAGCACGAGATCAACCTGGTTACCTCATGGAACAACCCTGCCGATTCTCATCCAAGGACATGGGAAG
CTCAGTTCCAGTCCGGTATCAAGACCATTGCTCTGATCGCCGTCAGAGAAGGCGTTGTACAGTTAGGCTCCATGAAGAAG
GTGGCGGAGGACCTGAGCTACGTGGTGGCGCTGCGGCGGAAGTTCGGGTACCTGGAGAGCATCCCGGGCGTGCTGCTGCC
GCACCCGTCGTCGGCCGCGTTCCCCGGCGCCGGCGGCCTGCAGGACGCGGCCTGGGCGCCGTCGCCGACGATGGACCTCT
ACGACCCCTACTACGGCGCCCATGCCGCGGCGGCGCAGATGCACCACATCGTGCCGTCGATGAGCAGCCTGGAGGCGCTC
CTCTCGAAGCTGCCGTCGGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis