Browse Element(s) Details


OsAffx.3030.1.S1_at

Description tigr:9630.m04987
TID=OsAffx.3030.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5087011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g50840Os.16883.1.S1_a_at11/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50840Os.15456.2.S1_x_at6/112+31058195..31065395BAH domain containing protein, expressed
LOC_Os02g50850Os.8858.1.S1_a_at11/112+31072266..31078068BAH domain containing protein, expressed
LOC_Os02g50860Os.5505.1.S1_at10/112+31078584..31082315RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os02g50870OsAffx.3030.1.S1_at11/112+31083439..31087772hypothetical protein
LOC_Os02g50880OsAffx.24819.1.S1_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.2.S1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50880Os.14754.1.A1_s_at11/112+31090304..31095320DegP protease, putative, expressed
LOC_Os02g50890OsAffx.12581.1.S1_at11/112+31100358..31101563hypothetical protein
LOC_Os02g50900OsAffx.3031.1.S1_at11/112+31105977..31108488expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3030.1.S1_at--145--931Chr02:31087701..31087725 (25 bp)
AGGCATTGGCGCGATCTTGAAAGAT
LOC_Os02g50870
OsAffx.3030.1.S1_at--703--5571Chr02:31087637..31087661 (25 bp)
GAAAGGTGCTATGATGCACTGGAAA
LOC_Os02g50870
OsAffx.3030.1.S1_at--687--5091Chr02:31087622..31087646 (25 bp)
GCACTGGAAATGGAGCTTCTGGCGT
LOC_Os02g50870
OsAffx.3030.1.S1_at--862--8511Chr02:31087618..31087642 (25 bp)
TGGAAATGGAGCTTCTGGCGTGTAA
LOC_Os02g50870
OsAffx.3030.1.S1_at--1159--2951Chr02:31087614..31087638 (25 bp)
AATGGAGCTTCTGGCGTGTAAGGAA
LOC_Os02g50870
OsAffx.3030.1.S1_at--622--5891Chr02:31087610..31087634 (25 bp)
GAGCTTCTGGCGTGTAAGGAAGAAA
LOC_Os02g50870
OsAffx.3030.1.S1_at--133--8191Chr02:31087593..31087617 (25 bp)
GGAAGAAATTGTTTTTGGCGATTCA
LOC_Os02g50870
OsAffx.3030.1.S1_at--1002--6551Chr02:31087574..31087598 (25 bp)
GATTCATGGACTCTAAAACTCATCG
LOC_Os02g50870
OsAffx.3030.1.S1_at--1076--9611Chr02:31087571..31087595 (25 bp)
TCATGGACTCTAAAACTCATCGTGG
LOC_Os02g50870
OsAffx.3030.1.S1_at--158--10731Chr02:31087514..31087560 (25 bp)
TTGCTTGGAAGCGAGAGATCTATCT
LOC_Os02g50870
OsAffx.3030.1.S1_at--935--6011Chr02:31087502..31087526 (25 bp)
GAGAGATCTATCTACTCTGGCCTAT
LOC_Os02g50870
Target Sequence 
AGGCATTGGCGCGATCTTGAAAGATGAGAGAGGAACTGTCATCTTTTCTTCCTGCAGATTTTTTGAAAGGTGCTATGATG
CACTGGAAATGGAGCTTCTGGCGTGTAAGGAAGAAATTGTTTTTGGCGATTCATGGACTCTAAAACTCATCGTGGTGGAA
TCAGATTGCTTGGAAGCGAGAGATCTATCTACTCTGGCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3030.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis